Motif HL_23537.1 Version HL_23537.1 of this group appears in releases 3.2 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4QJD_004 | 4QJD | 0.4340 | 0 | T-loop with unstacked turn | D | Twister RNA sequence | G | 43 | U | 44 | C | 45 | C | 46 | C | 47 | A | 48 | A | 49 | G | 50 | C | 51 | C | 52 | cWW | ntWW |
| 2 | HL_4RGE_003 | 4RGE | 0.1005 | 0 | T-loop with unstacked turn | C | env22 twister ribozyme | G | 29 | U | 30 | C | 31 | C | 32 | U | 33 | A | 34 | A | 35 | G | 36 | C | 37 | C | 38 | cWW | tWH |
| 3 | HL_4OJI_002 | 4OJI | 0.0000 | 0 | T-loop with unstacked turn | A | RNA (52-MER) | G | 23 | U | 24 | C | 25 | C | 26 | C | 27 | A | 28 | A | 29 | G | 30 | C | 31 | C | 32 | cWW | tWH |
| 4 | HL_4QJH_006 | 4QJH | 0.2640 | 0 | F | Twister Ribozyme | G | 39 | U | 40 | U | 41 | A | 42 | C | 43 | A | 44 | A | 45 | G | 46 | C | 47 | C | 48 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUCCCAAGCC | 2 |
| GUCCUAAGCC | 1 |
| GUUACAAGCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCCCAAGC | 2 |
| UCCUAAGC | 1 |
| UUACAAGC | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- T-loop with unstacked turn (3)
- (1)
- Basepair signature
- cWW-R-R-tWH-R-R-R-R
- Heat map statistics
- Min 0.10 | Avg 0.25 | Max 0.47
Coloring options: