Motif HL_24596.2 Version HL_24596.2 of this group appears in releases 3.90 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_9DXL_002 | 9DXL | 0.1393 | 2 | A | RhoBAST aptamer | U | 14 | G | 15 | A | 16 | G | 18 | A | 20 | cWW |
| 2 | HL_9BUN_002 | 9BUN | 0.0794 | 2 | A | RNA (48-MER) | U | 14 | G | 15 | A | 16 | G | 18 | A | 20 | cWW |
| 3 | HL_8JY0_002 | 8JY0 | 0.0000 | 2 | B | RhoBAST | U | 30 | G | 31 | A | 32 | G | 34 | A | 36 | cWW |
| 4 | HL_2QUX_002 | 2QUX | 0.7076 | 3 | F | RNA (25-MER) | G | 10 | A | 11 | A | 13 | G | 15 | C | 17 | cWW |
| 5 | HL_8C3A_070 | 8C3A | 0.7423 | 3 | 1 | LSU rRNA | C | 3205 | G | 3206 | G | 3207 | A | 3210 | G | 3212 | cWW |
| 6 | HL_5TBW_069 | 5TBW | 0.7150 | 3 | 1 | LSU rRNA | C | 3240 | G | 3241 | G | 3242 | A | 3245 | G | 3247 | cWW |
| 7 | HL_5B2P_003 | 5B2P | 0.7755 | 0 | B | Guide RNA | A | 64 | U | 65 | U | 66 | U | 67 | U | 68 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAGGA | 3 |
| CGGAAAGG | 2 |
| GAUAUGGC | 1 |
| AUUUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAGG | 3 |
| GGAAAG | 2 |
| AUAUGG | 1 |
| UUU | 1 |
Release history
| Release | 3.90 |
|---|---|
| Date | 2024-11-06 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-F-F-F
- Heat map statistics
- Min 0.07 | Avg 0.51 | Max 0.82
Coloring options: