Motif HL_24711.1 Version HL_24711.1 of this group appears in releases 0.3 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1L2X_001 | 1L2X | 0.0000 | 1 | A | RNA pseudoknot | G | 7 | C | 8 | A | 9 | C | 10 | C | 11 | G | 12 | C | 14 | |||
| 2 | HL_2A43_001 | 2A43 | 0.1275 | 1 | GNRA-like with tWH | A | Putative RNA-dependent RNA polymerase ribosomal frameshift site | G | 6 | C | 7 | A | 8 | C | 9 | C | 10 | G | 11 | C | 13 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCACCGUC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CACCGU | 2 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 | 1.16 | 1.17 | 1.18 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-15 | 2014-07-26 | 2014-09-06 | 2014-10-09 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_24711.1 | Only in the parent motif |
|---|---|---|---|
| HL_03576.1 Compare | HL_1L2X_001, HL_2A43_001 | HL_2XZM_033, HL_1FJG_014, HL_2AW7_014 |
Children motifs
This motif has no children motifs.- Annotations
-
- (1)
- GNRA-like with tWH (1)
- Basepair signature
- cWW-tWH-R-R-R
- Heat map statistics
- Min 0.13 | Avg 0.06 | Max 0.13
Coloring options: