Motif HL_25307.1 Version HL_25307.1 of this group appears in releases 4.7 to 4.7
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8GLP_116 | 8GLP | 0.1464 | 2 | S2 | SSU rRNA | G | 1658 | U | 1659 | A | 1661 | U | 1662 | A | 1663 | A | 1664 | C | 1666 | cWW | tWH | |
| 2 | HL_9H3G_107 | 9H3G | 0.0000 | 2 | h1 | SSU rRNA | G | 1596 | U | 1597 | A | 1599 | U | 1600 | C | 1601 | A | 1602 | C | 1604 | cWW | tWH | |
| 3 | HL_8CRE_224 | 8CRE | 0.1102 | 2 | T-loop with 1 bulged base | CM | SSU rRNA | G | 1581 | U | 1582 | A | 1584 | U | 1585 | C | 1586 | A | 1587 | C | 1589 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUCAUCAGC | 2 |
| GUCAUAAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCAUCAG | 2 |
| UCAUAAG | 1 |
Release history
| Release | 4.7 |
|---|---|
| Date | 2026-02-25 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- T-loop with 1 bulged base (1)
- Basepair signature
- cWW-tWH-F-F-F
- Heat map statistics
- Min 0.11 | Avg 0.10 | Max 0.17
Coloring options: