Motif HL_25553.1 Version HL_25553.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V9F_001 | 4V9F | 0.7872 | 0 | Pseudoknot with intercalation | 0 | LSU rRNA | U | 55 | G | 56 | C | 57 | C | 58 | A | 59 | A | 60 | G | 61 | C | 62 | U | 63 | G | 64 | cWW | cSH |
| 2 | HL_2XD0_001 | 2XD0 | 0.0000 | 0 | V | TOXI | U | 4 | G | 5 | A | 6 | U | 7 | U | 8 | U | 9 | G | 10 | C | 11 | U | 12 | A | 13 | ncWW | ncSH | |
| 3 | HL_2XD0_006 | 2XD0 | 0.1187 | 0 | Pseudoknot with intercalation | W | TOXI | U | 4 | G | 5 | A | 6 | U | 7 | U | 8 | U | 9 | G | 10 | C | 11 | U | 12 | A | 13 | cWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAUUUGCUA | 2 |
| UGCCAAGCUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUUUGCU | 2 |
| GCCAAGCU | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Pseudoknot with intercalation (2)
- (1)
- Basepair signature
- cWW-R-R-R-cSH-R-R
- Heat map statistics
- Min 0.12 | Avg 0.38 | Max 0.80
Coloring options: