Motif HL_25795.2 Version HL_25795.2 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2B3J_001 | 2B3J | 0.7662 | 3 | E | anticodon stem-loop of t-RNA-Arg2 (nucleotides 27-42) | A | 31 | C | 32 | G | 36 | G | 37 | A | 38 | U | 39 | cWW | |
| 2 | HL_4V9F_019 | 4V9F | 0.5905 | 1 | 0 | LSU rRNA | G | 670 | A | 671 | U | 673 | A | 674 | U | 675 | C | 676 | cWW | tSH |
| 3 | HL_9E6Q_019 | 9E6Q | 0.6046 | 1 | 1 | LSU rRNA | G | 694 | U | 695 | C | 697 | A | 698 | A | 699 | C | 700 | cWW | ntSH |
| 4 | HL_9PN5_088 | 9PN5 | 0.0000 | 1 | B5 | SSU rRNA | U | 450 | A | 451 | U | 453 | U | 454 | C | 455 | A | 456 | cWW | |
| 5 | HL_9H3G_088 | 9H3G | 0.1810 | 1 | h1 | SSU rRNA | U | 452 | G | 453 | C | 455 | A | 456 | C | 457 | G | 458 | cWW | |
| 6 | HL_9SUM_082 | 9SUM | 0.1972 | 1 | CA | SSU rRNA | C | 439 | G | 440 | C | 442 | A | 443 | C | 444 | G | 445 | cWW | |
| 7 | HL_8GLP_095 | 8GLP | 0.1918 | 1 | S2 | SSU rRNA | C | 498 | G | 499 | C | 501 | C | 502 | C | 503 | G | 504 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACUCGGAU | 1 |
| GAGUAUC | 1 |
| GUUCAAC | 1 |
| UAAUUCA | 1 |
| UGACACG | 1 |
| CGACACG | 1 |
| CGACCCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GACAC | 2 |
| CU(P5P)CGGA | 1 |
| AGUAU | 1 |
| UUCAA | 1 |
| AAUUC | 1 |
| GACCC | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-F-F-F-F
- Heat map statistics
- Min 0.08 | Avg 0.45 | Max 0.90
Coloring options: