Motif HL_26055.1 Version HL_26055.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-5 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2GDI_001 | 2GDI | 0.6439 | 0 | X | C | 27 | U | 28 | G | 29 | C | 30 | G | 31 | U | 32 | G | 33 | cWW | tWW | |
| 2 | HL_5J7L_014 | 5J7L | 0.6739 | 0 | AA | G | 617 | C | 618 | U | 619 | C | 620 | A | 621 | A | 622 | C | 623 | cWW | ntWH | |
| 3 | HL_4LFB_014 | 4LFB | 0.6445 | 0 | A | G | 617 | C | 618 | U | 619 | C | 620 | A | 621 | A | 622 | C | 623 | cWW | tWH | |
| 4 | HL_3AL0_002 | 3AL0 | 0.4661 | 2 | E | A | 31 | C | 32 | C | 34 | U | 35 | G | 36 | A | 38 | U | 39 | cWW | cWW | |
| 5 | HL_1Y26_002 | 1Y26 | 0.0614 | 1 | X | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH | |
| 6 | HL_1Y27_002 | 1Y27 | 0.0548 | 1 | X | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ||
| 7 | HL_4FEN_002 | 4FEN | 0.0000 | 1 | B | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH | |
| 8 | HL_4XNR_002 | 4XNR | 0.0658 | 1 | X | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH | |
| 9 | HL_4LX6_002 | 4LX6 | 0.1287 | 1 | A | G | 46 | C | 47 | U | 49 | C | 50 | C | 51 | A | 52 | C | 53 | cWW | ||
| 10 | HL_3LA5_002 | 3LA5 | 0.1849 | 1 | A | G | 46 | C | 47 | U | 49 | C | 50 | C | 51 | A | 52 | C | 53 | cWW | ||
| 11 | HL_4LFB_002 | 4LFB | 0.6298 | 0 | A | G | 80 | U | 81 | U | 82 | U | 83 | U | 84 | A | 88 | C | 89 | cWW | ||
| 12 | HL_4V5O_064 | 4V5O | 0.6355 | 0 | BA | U | 1330 | A | 1331 | A | 1332 | A | 1333 | U | 1334 | A | 1335 | A | 1336 | cWW | ||
| 13 | HL_4V8P_146 | 4V8P | 0.8852 | 0 | D1 | U | 2908 | U | 2909 | G | 2910 | U | 2911 | U | 2912 | C | 2913 | A | 2914 | cWW | ||
| 14 | HL_4WF9_058 | 4WF9 | 0.8306 | 0 | X | C | 2578 | U | 2579 | G | 2580 | U | 2581 | U | 2582 | C | 2583 | G | 2584 | cWW | ||
| 15 | HL_4IOA_061 | 4IOA | 0.8708 | 0 | X | C | 2530 | U | 2531 | G | 2532 | U | 2533 | U | 2534 | C | 2535 | G | 2536 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUUCUAC | 4 |
| GCUCAAC | 2 |
| GCUUCCAC | 2 |
| CUGUUCG | 2 |
| CUGCGUG | 1 |
| ACUCUGGAU | 1 |
| GUUUUAC | 1 |
| UAAAUAA | 1 |
| UUGUUCA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUCUA | 4 |
| UGUUC | 3 |
| CUCAA | 2 |
| CUUCCA | 2 |
| UGCGU | 1 |
| CUCUGGA | 1 |
| UUUUA | 1 |
| AAAUA | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (15)
- Basepair signature
- cWW-R-R-R-R
- Heat map statistics
- Min 0.05 | Avg 0.56 | Max 0.89
Coloring options: