Motif HL_26295.1 Version HL_26295.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3J9W_054 | 3J9W | 0.6238 | 0 | BA | LSU rRNA | A | 656 | G | 657 | A | 658 | A | 659 | G | 660 | A | 661 | U | 662 | cWW | tSH | |
| 2 | HL_5J7L_148 | 5J7L | 0.4706 | 0 | GNRA | DA | LSU rRNA | C | 487 | G | 488 | G | 489 | C | 490 | G | 491 | A | 492 | G | 493 | cWW | tSH |
| 3 | HL_4V4Q_130 | 4V4Q | 0.4008 | 0 | GNRA (H) | CA | SSU rRNA | U | 1165 | G | 1166 | A | 1167 | U | 1168 | A | 1169 | A | 1170 | A | 1171 | cWW | tSH |
| 4 | HL_1FJG_012 | 1FJG | 0.3125 | 0 | GNRA (H) | A | SSU rRNA | C | 458 | G | 459 | A | 460 | C | 461 | G | 462 | A | 463 | G | 474 | cWW | tSH |
| 5 | HL_3J9W_027 | 3J9W | 0.0000 | 0 | GNRA (H) | AA | SSU rRNA | U | 1174 | G | 1175 | A | 1176 | C | 1177 | A | 1178 | A | 1179 | A | 1180 | cWW | tSH |
| 6 | HL_3J7P_013 | 3J7P | 0.4869 | 0 | 5 | LSU rRNA | C | 1252 | G | 1253 | A | 1254 | A | 1255 | G | 1256 | A | 1257 | G | 1258 | cWW | tSH | |
| 7 | HL_5FDU_042 | 5FDU | 0.6846 | 0 | 1A | LSU rRNA | U | 1765 | G | 1766 | A | 1767 | U | 1768 | G | 1769 | A | 1770 | G | 1771 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGAAGAU | 1 |
| CGGCGAG | 1 |
| UGAUAAA | 1 |
| CGACGAG | 1 |
| UGACAAA | 1 |
| CGAAGAG | 1 |
| UGAUGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAGA | 2 |
| GGCGA | 1 |
| GAUAA | 1 |
| GACGA | 1 |
| GACAA | 1 |
| GAUGA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- GNRA (H) (3)
- (3)
- GNRA (1)
- Basepair signature
- cWW-tSH-R-R-R
- Heat map statistics
- Min 0.30 | Avg 0.53 | Max 0.93
Coloring options: