Motif HL_26380.1 Version HL_26380.1 of this group appears in releases 3.85 to 3.87
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_4V88_197 | 4V88 | 0.0000 | 4 | A6 | SSU rRNA | U | 450 | A | 451 | A | 456 | cWW | |
2 | HL_8JY0_002 | 8JY0 | 0.3309 | 4 | B | RhoBAST | U | 30 | G | 31 | A | 36 | cWW | |
3 | HL_9BUN_002 | 9BUN | 0.3559 | 4 | A | RNA (48-MER) | U | 14 | G | 15 | A | 20 | cWW | |
4 | HL_2ZNI_001 | 2ZNI | 0.3293 | 4 | C | bacterial tRNA | C | 13 | G | 14 | G | 21 | cWW | |
5 | HL_2QUX_002 | 2QUX | 0.7422 | 5 | F | RNA (25-MER) | G | 10 | A | 11 | C | 17 | cWW | |
6 | HL_8UO6_007 | 8UO6 | 0.8942 | 4 | B | HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold | A | 77 | A | 78 | U | 83 | cWW | |
7 | HL_5XWP_001 | 5XWP | 0.5834 | 8 | C | RNA (59-MER) | C | 9 | A | 10 | G | 19 | cWW | |
8 | HL_8C3A_070 | 8C3A | 0.9262 | 5 | 1 | LSU rRNA | C | 3205 | G | 3206 | G | 3212 | cWW | |
9 | HL_5TBW_069 | 5TBW | 0.9465 | 5 | 1 | LSU rRNA | C | 3240 | G | 3241 | G | 3247 | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UGAAGGA | 2 |
CGGAAAGG | 2 |
UAAUUCA | 1 |
CGAAUAG | 1 |
GAUAUGGC | 1 |
AAUUAUU | 1 |
CAAAAAUGAAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GAAGG | 2 |
GGAAAG | 2 |
AAUUC | 1 |
GAAUA | 1 |
AUAUGG | 1 |
AUUAU | 1 |
AAAAAUGAA | 1 |
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