Motif HL_26380.1 Version HL_26380.1 of this group appears in releases 3.85 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V88_197 | 4V88 | 0.0000 | 4 | A6 | SSU rRNA | U | 450 | A | 451 | A | 456 | cWW |
| 2 | HL_8JY0_002 | 8JY0 | 0.3309 | 4 | B | RhoBAST | U | 30 | G | 31 | A | 36 | cWW |
| 3 | HL_9BUN_002 | 9BUN | 0.3559 | 4 | A | RNA (48-MER) | U | 14 | G | 15 | A | 20 | cWW |
| 4 | HL_2ZNI_001 | 2ZNI | 0.3293 | 4 | C | bacterial tRNA | C | 13 | G | 14 | G | 21 | cWW |
| 5 | HL_2QUX_002 | 2QUX | 0.7422 | 5 | F | RNA (25-MER) | G | 10 | A | 11 | C | 17 | cWW |
| 6 | HL_8UO6_007 | 8UO6 | 0.8942 | 4 | B | HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold | A | 77 | A | 78 | U | 83 | cWW |
| 7 | HL_5XWP_001 | 5XWP | 0.5834 | 8 | C | RNA (59-MER) | C | 9 | A | 10 | G | 19 | cWW |
| 8 | HL_8C3A_070 | 8C3A | 0.9262 | 5 | 1 | LSU rRNA | C | 3205 | G | 3206 | G | 3212 | cWW |
| 9 | HL_5TBW_069 | 5TBW | 0.9465 | 5 | 1 | LSU rRNA | C | 3240 | G | 3241 | G | 3247 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAGGA | 2 |
| CGGAAAGG | 2 |
| UAAUUCA | 1 |
| CGAAUAG | 1 |
| GAUAUGGC | 1 |
| AAUUAUU | 1 |
| CAAAAAUGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAGG | 2 |
| GGAAAG | 2 |
| AAUUC | 1 |
| GAAUA | 1 |
| AUAUGG | 1 |
| AUUAU | 1 |
| AAAAAUGAA | 1 |
Coloring options: