RNA 3D Hub //

Motif HL_26881.2 Version HL_26881.2 of this group appears in releases 3.84 to 3.84

#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 71-72-6
1 HL_4RMO_0014RMO0.37895BRNA (45-MER)C11U12G17A18U19A20G22cWWtWH
2 HL_5TPY_0055TPY0.22014ARNA (71-MER)U28U29G33G34A35A36G38cWWtWH
3 HL_7U4A_0027U4A0.00004ARNA (70-MER)U28U29G33G34A35A36G38cWWtWH
4 HL_2A43_0012A430.40111ARNA PseudoknotG6C7A8C9C10G11C13cWWtWH
5 HL_5J7L_0145J7L0.51290AA SSU rRNAG617C618U619C620A621A622C623cWWntWH
6 HL_4LFB_0144LFB0.48930A SSU rRNAG617C618U619C620A621A622C623cWWtWH
7 HL_6CZR_0856CZR0.561901a SSU rRNAG601C602U603C604A605A606C607cWWntWH

3D structures

Complete motif including flanking bases
SequenceCounts
GCUCAAC3
UUUGGGGAAAG2
CUGACCGAUAUG1
GCACCGUC1
Non-Watson-Crick part of the motif
SequenceCounts
CUCAA3
UUGGGGAAA2
UGACCGAUAU1
CACCGU1

Release history

Release3.84
Date2024-05-22
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (7)
    • Basepair signature
    cWW-tWH-F-F-F
    Heat map statistics
    Min 0.12 | Avg 0.38 | Max 0.70
    Help

    Coloring options:

    HL_4RMO_001:HL_4RMO_001 = 0HL_4RMO_001:HL_5TPY_005 = 0.402HL_4RMO_001:HL_7U4A_002 = 0.3789HL_4RMO_001:HL_2A43_001 = 0.6185HL_4RMO_001:HL_5J7L_014 = 0.6695HL_4RMO_001:HL_4LFB_014 = 0.701HL_4RMO_001:HL_6CZR_085 = 0.6771HL_5TPY_005:HL_4RMO_001 = 0.402HL_5TPY_005:HL_5TPY_005 = 0HL_5TPY_005:HL_7U4A_002 = 0.2201HL_5TPY_005:HL_2A43_001 = 0.498HL_5TPY_005:HL_5J7L_014 = 0.6114HL_5TPY_005:HL_4LFB_014 = 0.5637HL_5TPY_005:HL_6CZR_085 = 0.6184HL_7U4A_002:HL_4RMO_001 = 0.3789HL_7U4A_002:HL_5TPY_005 = 0.2201HL_7U4A_002:HL_7U4A_002 = 0HL_7U4A_002:HL_2A43_001 = 0.4011HL_7U4A_002:HL_5J7L_014 = 0.5129HL_7U4A_002:HL_4LFB_014 = 0.4893HL_7U4A_002:HL_6CZR_085 = 0.5619HL_2A43_001:HL_4RMO_001 = 0.6185HL_2A43_001:HL_5TPY_005 = 0.498HL_2A43_001:HL_7U4A_002 = 0.4011HL_2A43_001:HL_2A43_001 = 0HL_2A43_001:HL_5J7L_014 = 0.2394HL_2A43_001:HL_4LFB_014 = 0.2467HL_2A43_001:HL_6CZR_085 = 0.2874HL_5J7L_014:HL_4RMO_001 = 0.6695HL_5J7L_014:HL_5TPY_005 = 0.6114HL_5J7L_014:HL_7U4A_002 = 0.5129HL_5J7L_014:HL_2A43_001 = 0.2394HL_5J7L_014:HL_5J7L_014 = 0HL_5J7L_014:HL_4LFB_014 = 0.1232HL_5J7L_014:HL_6CZR_085 = 0.2203HL_4LFB_014:HL_4RMO_001 = 0.701HL_4LFB_014:HL_5TPY_005 = 0.5637HL_4LFB_014:HL_7U4A_002 = 0.4893HL_4LFB_014:HL_2A43_001 = 0.2467HL_4LFB_014:HL_5J7L_014 = 0.1232HL_4LFB_014:HL_4LFB_014 = 0HL_4LFB_014:HL_6CZR_085 = 0.1797HL_6CZR_085:HL_4RMO_001 = 0.6771HL_6CZR_085:HL_5TPY_005 = 0.6184HL_6CZR_085:HL_7U4A_002 = 0.5619HL_6CZR_085:HL_2A43_001 = 0.2874HL_6CZR_085:HL_5J7L_014 = 0.2203HL_6CZR_085:HL_4LFB_014 = 0.1797HL_6CZR_085:HL_6CZR_085 = 0HL_4RMO_001HL_5TPY_005HL_7U4A_002HL_2A43_001HL_5J7L_014HL_4LFB_014HL_6CZR_085Discrepancy0.000.100.200.300.400.500.600.70
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