Motif HL_26881.3 Version HL_26881.3 of this group appears in releases 3.85 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2IY5_002 | 2IY5 | 0.6335 | 3 | tRNA anticodon loop | T | tRNA | A | 31 | C | 32 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ncWB |
| 2 | HL_6CZR_085 | 6CZR | 0.5619 | 1 | 1a | SSU rRNA | G | 601 | C | 602 | C | 604 | A | 605 | A | 606 | C | 607 | cWW | ntWH | |
| 3 | HL_4LFB_014 | 4LFB | 0.4893 | 1 | A | SSU rRNA | G | 617 | C | 618 | C | 620 | A | 621 | A | 622 | C | 623 | cWW | tWH | |
| 4 | HL_5J7L_014 | 5J7L | 0.5129 | 1 | AA | SSU rRNA | G | 617 | C | 618 | C | 620 | A | 621 | A | 622 | C | 623 | cWW | ntWH | |
| 5 | HL_2A43_001 | 2A43 | 0.4011 | 2 | A | RNA Pseudoknot | G | 6 | C | 7 | C | 9 | C | 10 | G | 11 | C | 13 | cWW | tWH | |
| 6 | HL_7U4A_002 | 7U4A | 0.0000 | 5 | A | RNA (70-MER) | U | 28 | U | 29 | G | 34 | A | 35 | A | 36 | G | 38 | cWW | tWH | |
| 7 | HL_5TPY_005 | 5TPY | 0.2201 | 5 | A | RNA (71-MER) | U | 28 | U | 29 | G | 34 | A | 35 | A | 36 | G | 38 | cWW | tWH | |
| 8 | HL_4RMO_001 | 4RMO | 0.3789 | 6 | B | RNA (45-MER) | C | 11 | U | 12 | A | 18 | U | 19 | A | 20 | G | 22 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCUCAAC | 3 |
| UUUGGGGAAAG | 2 |
| ACUGAAAAU | 1 |
| GCACCGUC | 1 |
| CUGACCGAUAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUCAA | 3 |
| UUGGGGAAA | 2 |
| CUGAAAA | 1 |
| CACCGU | 1 |
| UGACCGAUAU | 1 |
- Annotations
-
- (7)
- tRNA anticodon loop (1)
- Basepair signature
- cWW-tWH-F-F
- Heat map statistics
- Min 0.12 | Avg 0.41 | Max 0.72
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