Motif HL_27429.5 Version HL_27429.5 of this group appears in releases 1.17 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2QBG_014 | 2QBG | 0.3194 | 1 | B | 23S rRNA | A | 382 | C | 383 | A | 384 | C | 385 | U | 387 | G | 388 | G | 389 | U | 390 | A | 391 | U | 392 | cWW |
| 2 | HL_4QCN_012 | 4QCN | 0.0000 | 1 | A | 23S Ribosomal RNA | G | 409 | U | 410 | U | 411 | C | 412 | U | 414 | G | 415 | G | 416 | A | 417 | G | 418 | C | 419 | cWW |
| 3 | HL_4IOA_012 | 4IOA | 0.2426 | 1 | X | LSU rRNA | G | 395 | U | 396 | U | 397 | C | 398 | U | 400 | G | 401 | A | 402 | A | 403 | A | 404 | C | 405 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACACGUGGUAU | 1 |
| GUUCGUGGAGC | 1 |
| GUUCGUGAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CACGUGGUA | 1 |
| UUCGUGGAG | 1 |
| UUCGUGAAA | 1 |
Release history
Parent motifs
| Parent motif | Common motif instances | Only in HL_27429.5 | Only in the parent motif |
|---|---|---|---|
| HL_27429.4 Compare | HL_2QBG_014, HL_4IOA_012 | HL_4QCN_012 | HL_4NVV_012 |
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.24 | Avg 0.21 | Max 0.39
Coloring options: