Motif HL_27656.2 Version HL_27656.2 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3AKZ_011 | 3AKZ | 0.6260 | 2 | E | tRNA | A | 31 | C | 32 | C | 34 | U | 35 | G | 36 | A | 38 | U | 39 | cWW | ncSW | |
| 2 | HL_9SUM_096 | 9SUM | 0.6179 | 0 | CA | SSU rRNA | C | 1372 | U | 1373 | U | 1374 | G | 1375 | A | 1376 | A | 1377 | G | 1378 | cWW | ntSH | |
| 3 | HL_9PN5_106 | 9PN5 | 0.5919 | 0 | B5 | SSU rRNA | U | 1396 | U | 1397 | U | 1398 | C | 1399 | A | 1400 | A | 1401 | G | 1402 | cWW | ||
| 4 | HL_8B0X_013 | 8B0X | 0.0000 | 0 | GNRA-like with tWH (H) | A | SSU rRNA | G | 617 | C | 618 | U | 619 | C | 620 | A | 621 | A | 622 | C | 623 | cWW | ntWH |
| 5 | HL_4LFB_014 | 4LFB | 0.0981 | 0 | GNRA-like with tWH | A | SSU rRNA | G | 617 | C | 618 | U | 619 | C | 620 | A | 621 | A | 622 | C | 623 | cWW | tWH |
| 6 | HL_2A43_001 | 2A43 | 0.2210 | 1 | GNRA-like with tWH | A | Putative RNA-dependent RNA polymerase ribosomal frameshift site | G | 6 | C | 7 | A | 8 | C | 9 | C | 10 | G | 11 | C | 13 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCUCAAC | 2 |
| ACUCUGGAU | 1 |
| CUUGAAG | 1 |
| UUUCAAG | 1 |
| GCACCGUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUCAA | 2 |
| CUCUGGA | 1 |
| UUGAA | 1 |
| UUCAA | 1 |
| CACCGU | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- GNRA-like with tWH (2)
- GNRA-like with tWH (H) (1)
- Basepair signature
- cWW-F-F-F-F-F
- Heat map statistics
- Min 0.10 | Avg 0.44 | Max 0.68
Coloring options: