Motif HL_27747.2 Version HL_27747.2 of this group appears in releases 3.37 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-4 | 5-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4IOA_023 | 4IOA | 0.5238 | 1 | X | LSU rRNA | U | 792 | G | 793 | A | 795 | A | 796 | A | 797 | G | 798 | cWW | ncSW | |
| 2 | HL_4Y4O_126 | 4Y4O | 0.0000 | 1 | 2A | LSU rRNA | U | 779 | G | 780 | A | 782 | A | 783 | A | 784 | G | 785 | cWW | tSW | |
| 3 | HL_4WF9_024 | 4WF9 | 0.3458 | 1 | X | LSU rRNA | A | 824 | G | 825 | A | 827 | A | 828 | U | 829 | U | 830 | cWW | tSW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAAAG | 2 |
| AGAAAUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAAA | 2 |
| GAAAU | 1 |
Release history
| Release | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-tSW-R
- Heat map statistics
- Min 0.35 | Avg 0.33 | Max 0.64
Coloring options: