Motif HL_28422.2 Version HL_28422.2 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1EIY_001 | 1EIY | 0.5002 | 5 | C | tRNA | C | 13 | A | 14 | G | 15 | A | 21 | G | 22 | cWW | ||
| 2 | HL_4MGM_003 | 4MGM | 0.0000 | 4 | B | tRNA | C | 13 | A | 14 | G | 15 | A | 20 | G | 21 | cWW | ||
| 3 | HL_3AL0_001 | 3AL0 | 0.4257 | 4 | tRNA D-loop | E | tRNA | U | 13 | A | 14 | A | 15 | A | 21 | G | 22 | cWW | cWS |
| 4 | HL_1VWW_004 | 1VWW | 0.8579 | 2 | 5 | LSU rRNA | C | 131 | G | 132 | C | 133 | C | 136 | G | 137 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGUUGGUAG | 1 |
| CAGUGGUAG | 1 |
| UAACGGUAG | 1 |
| CGCGGCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGUUGGUA | 1 |
| AGUGGUA | 1 |
| AACGGUA | 1 |
| GCGGC | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-06 |
| Status | Updated, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in HL_28422.2 | Only in the parent motif |
|---|---|---|---|
| HL_28422.1 Compare | HL_3AL0_001, HL_1VWW_004, HL_4MGM_003 | HL_1EIY_001 | HL_3A2K_001 |
| HL_09697.1 Compare | HL_1EIY_001 | HL_3AL0_001, HL_1VWW_004, HL_4MGM_003 | HL_3SLQ_003 |
Children motifs
| Child motif | Common motif instances | Only in HL_28422.2 | Only in the child motif |
|---|---|---|---|
| HL_13352.1 Compare | HL_3AL0_001, HL_4MGM_003 | HL_1EIY_001, HL_1VWW_004 | HL_4W21_004, HL_3A2K_001 |
| HL_91125.1 Compare | HL_1EIY_001 | HL_3AL0_001, HL_1VWW_004, HL_4MGM_003 | HL_3SLQ_003 |
- Annotations
-
- (3)
- tRNA D-loop (1)
- Basepair signature
- cWW-R-R
- Heat map statistics
- Min 0.43 | Avg 0.55 | Max 1.00
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