Motif HL_30879.1 Version HL_30879.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3JAM_030 | 3JAM | 0.7241 | 0 | 2 | SSU rRNA | C | 1358 | A | 1359 | C | 1360 | U | 1361 | U | 1362 | G | 1363 | cWW | |
| 2 | HL_4KR7_001 | 4KR7 | 0.0000 | 0 | M | RNA (39-MER) | G | 19 | G | 20 | A | 21 | A | 22 | A | 23 | C | 24 | cWW | |
| 3 | HL_1F1T_001 | 1F1T | 0.9420 | 0 | A | MALACHITE GREEN APTAMER RNA | C | 14 | G | 15 | A | 16 | G | 17 | A | 18 | G | 19 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CACUUG | 1 |
| GGAAAC | 1 |
| CGAGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACUU | 1 |
| GAAA | 1 |
| GAGA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-R-R-R
- Heat map statistics
- Min 0.72 | Avg 0.58 | Max 0.95
Coloring options: