Motif HL_32346.4 Version HL_32346.4 of this group appears in releases 3.98 to 3.98
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5CCB_002 | 5CCB | 0.3221 | 2 | N | tRNA | U | 33 | U | 35 | A | 37 | cWW |
| 2 | HL_6M0X_002 | 6M0X | 0.2901 | 1 | B | RNA (71-MER) | U | 56 | C | 58 | A | 59 | cWW |
| 3 | HL_6U8D_003 | 6U8D | 0.2544 | 1 | A | JIIIabc RNA (68-MER) | C | 232 | U | 234 | G | 235 | cWW |
| 4 | HL_2UWM_002 | 2UWM | 0.3008 | 1 | D | RNA (23-mer) | G | 22 | U | 24 | C | 25 | cWW |
| 5 | HL_8P9A_116 | 8P9A | 0.2367 | 2 | AR | LSU rRNA | C | 132 | U | 134 | G | 136 | cWW |
| 6 | HL_8VM9_005 | 8VM9 | 0.2980 | 2 | R | Enterovirus 5' cloverleaf cis-acting replication element | C | 34 | U | 36 | G | 38 | cWW |
| 7 | HL_9DFE_050 | 9DFE | 0.0000 | 3 | 1A | LSU rRNA | C | 2205 | A | 2208 | G | 2219 | cWW |
| 8 | HL_9C2K_003 | 9C2K | 0.2246 | 2 | R | Rev Response Element | C | 20 | A | 22 | G | 24 | cWW |
| 9 | HL_5J7L_176 | 5J7L | 0.3950 | 1 | DA | LSU rRNA | C | 1728 | C | 1730 | G | 1731 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUUA | 1 |
| UUCA | 1 |
| CGUG | 1 |
| GGUC | 1 |
| CUUCG | 1 |
| CAUUG | 1 |
| CGGAUG | 1 |
| CAAUG | 1 |
| CUCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UC | 2 |
| GU | 2 |
| UUU | 1 |
| UUC | 1 |
| AUU | 1 |
| GGAU | 1 |
| AAU | 1 |
Release history
| Release | 3.98 |
|---|---|
| Date | 2025-06-18 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: