Motif HL_32527.2 Version HL_32527.2 of this group appears in releases 3.48 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5J7L_179 | 5J7L | 0.2694 | 1 | GNRA related | DA | LSU rRNA | C | 1806 | G | 1807 | A | 1809 | A | 1810 | G | 1811 | cWW | ntSH |
| 2 | HL_3OXE_002 | 3OXE | 0.0000 | 1 | GNRA related | A | Glycine riboswitch | G | 49 | G | 50 | A | 52 | A | 53 | C | 54 | cWW | ntSH |
| 3 | HL_3IGI_004 | 3IGI | 0.4145 | 2 | A | Group II catalytic intron D1-D4-3 | G | 135 | G | 136 | C | 139 | A | 140 | C | 141 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAAAG | 1 |
| GGAAAC | 1 |
| GGAACAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAA | 2 |
| GAACA | 1 |
- Annotations
-
- GNRA related (2)
- (1)
- Basepair signature
- cWW-tSH-R
- Heat map statistics
- Min 0.27 | Avg 0.25 | Max 0.44
Coloring options: