Motif HL_32644.2 Version HL_32644.2 of this group appears in releases 1.8 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-7 | 8-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2QBG_050 | 2QBG | 0.0000 | 1 | B | 23S rRNA | G | 1910 | U | 1911 | A | 1912 | C | 1914 | U | 1915 | A | 1916 | U | 1917 | A | 1918 | A | 1919 | C | 1920 | cWW | ntSH | tHW | cSH | |
| 2 | HL_3V2F_046 | 3V2F | 0.3073 | 1 | A | 23S Ribosomal RNA | G | 1910 | U | 1911 | A | 1912 | C | 1914 | U | 1915 | A | 1916 | U | 1917 | A | 1918 | A | 1919 | C | 1920 | cWW | ntSH | tHW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAACUAUAAC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAACUAUAA | 2 |
Release history
| Release | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|
| Date | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_32644.2 | Only in the parent motif |
|---|---|---|---|
| HL_32644.1 Compare | HL_2QBG_050, HL_3V2F_046 | HL_3U5H_049 |
Children motifs
| Child motif | Common motif instances | Only in HL_32644.2 | Only in the child motif |
|---|---|---|---|
| HL_99908.1 Compare | HL_2QBG_050 | HL_3V2F_046 | HL_4NVV_046, HL_1VW3_035, HL_3U5H_049 |
- Annotations
- Basepair signature
- cWW-cSH-tHW-R-R-R
- Heat map statistics
- Min 0.31 | Avg 0.15 | Max 0.31
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