Motif HL_32644.1 Version HL_32644.1 of this group appears in releases 0.3 to 1.7
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 3-7 | 8-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2QBG_050 | 2QBG | 0.3073 | 1 | B | 23S rRNA | G | 1910 | U | 1911 | A | 1912 | C | 1914 | U | 1915 | A | 1916 | U | 1917 | A | 1918 | A | 1919 | C | 1920 | cWW | tHW | cSH |
| 2 | HL_3V2F_046 | 3V2F | 0.0000 | 1 | A | 23S Ribosomal RNA | G | 1910 | U | 1911 | A | 1912 | C | 1914 | U | 1915 | A | 1916 | U | 1917 | A | 1918 | A | 1919 | C | 1920 | cWW | tHW | cSH |
| 3 | HL_3U5H_049 | 3U5H | 0.0997 | 1 | 5 | 25S rRNA | G | 2253 | U | 2254 | A | 2255 | C | 2257 | U | 2258 | A | 2259 | U | 2260 | G | 2261 | A | 2262 | C | 2263 | cWW | tHW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAACUAUAAC | 2 |
| GUAACUAUGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAACUAUAA | 2 |
| UAACUAUGA | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_32644.1 | Only in the parent motif |
|---|---|---|---|
| HL_92124.1 Compare | HL_2QBG_050 | HL_3V2F_046, HL_3U5H_049 | HL_3PYO_048 |
Children motifs
| Child motif | Common motif instances | Only in HL_32644.1 | Only in the child motif |
|---|---|---|---|
| HL_32644.2 Compare | HL_2QBG_050, HL_3V2F_046 | HL_3U5H_049 | |
| HL_90579.3 Compare | HL_3U5H_049 | HL_2QBG_050, HL_3V2F_046 | HL_3V2F_057, HL_4IOA_058 |
- Annotations
-
- (3)
- Basepair signature
- cWW-cSH-tHW-R-R-R
- Heat map statistics
- Min 0.10 | Avg 0.17 | Max 0.36
Coloring options: