Motif HL_34027.5 Version HL_34027.5 of this group appears in releases 1.16 to 1.16
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3ADD_003 | 3ADD | 0.9593 | 0 | C | Selenocysteine transfer RNA | C | 47|||D | G | 47|||E | A | 47|||F | G | 47|||G | U | 47|||H | G | 47|||I | cWW |
| 2 | HL_1VWW_071 | 1VWW | 0.3035 | 2 | 7 | 5S ribosomal RNA | C | 36 | G | 37 | U | 38 | C | 39 | U | 40 | G | 41 | cWW |
| 3 | HL_3U5H_073 | 3U5H | 0.2289 | 0 | 7 | 5S rRNA | C | 36 | G | 37 | U | 38 | C | 39 | C | 40 | G | 41 | cWW |
| 4 | HL_4CUV_073 | 4CUV | 0.1989 | 0 | 3 | 5S RRNA | C | 36 | G | 37 | U | 38 | C | 39 | C | 40 | G | 41 | cWW |
| 5 | HL_1VX6_070 | 1VX6 | 0.1246 | 0 | B | 5S ribosomal RNA | C | 36 | A | 37 | U | 38 | C | 39 | A | 40 | G | 41 | cWW |
| 6 | HL_2QBG_001 | 2QBG | 0.0000 | 1 | A | 5S rRNA | C | 38 | A | 39 | U | 40 | C | 42 | C | 43 | G | 44 | cWW |
| 7 | HL_1MJI_001 | 1MJI | 0.1467 | 1 | C | 5S rRNA fragment | C | 38 | A | 39 | U | 40 | C | 42 | C | 43 | G | 44 | cWW |
| 8 | HL_4NVV_068 | 4NVV | 0.1185 | 1 | B | 5S Ribosomal RNA | C | 38 | A | 39 | U | 40 | C | 42 | C | 43 | G | 44 | cWW |
| 9 | HL_4IOA_069 | 4IOA | 0.1441 | 1 | Y | 5S rRNA | C | 40 | A | 41 | U | 42 | C | 44 | C | 45 | G | 46 | cWW |
| 10 | HL_1S72_071 | 1S72 | 0.1476 | 1 | 9 | 5S rRNA | C | 37 | A | 38 | U | 39 | C | 41 | C | 42 | G | 43 | cWW |
| 11 | HL_4A1C_005 | 4A1C | 0.1607 | 0 | 3 | 5S RRNA | C | 36 | A | 37 | U | 38 | U | 39 | C | 40 | G | 41 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUGCCG | 3 |
| CGUCCG | 2 |
| CGAGUG | 1 |
| GCACUUGC | 1 |
| CAUCAG | 1 |
| CAUUCCG | 1 |
| CAUCCCG | 1 |
| CAUUCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUGCC | 3 |
| GUCC | 2 |
| GAGU | 1 |
| CACUUG | 1 |
| AUCA | 1 |
| AUUCC | 1 |
| AUCCC | 1 |
| AUUC | 1 |
Release history
| Release | 1.16 |
|---|---|
| Date | 2014-07-26 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_34027.5 | Only in the parent motif |
|---|---|---|---|
| HL_34027.4 Compare | HL_1MJI_001, HL_1S72_071, HL_3ADD_003, HL_4IOA_069, HL_2QBG_001, HL_4CUV_073, HL_3U5H_073, HL_4NVV_068, HL_4A1C_005 | HL_1VWW_071, HL_1VX6_070 |
Children motifs
| Child motif | Common motif instances | Only in HL_34027.5 | Only in the child motif |
|---|---|---|---|
| HL_34027.6 Compare | HL_1MJI_001, HL_1S72_071, HL_2QBG_001, HL_4IOA_069, HL_4A1C_005, HL_1VWW_071, HL_1VX6_070, HL_3U5H_073, HL_3ADD_003, HL_4CUV_073 | HL_4NVV_068 | HL_4QCN_068 |
- Annotations
-
- (11)
- Basepair signature
- cWW-R-R-R
- Heat map statistics
- Min 0.11 | Avg 0.32 | Max 0.99
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