Motif HL_34388.1 Version HL_34388.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-8 | 3-9 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3J7P_017 | 3J7P | 0.0000 | 1 | 5 | LSU rRNA | C | 1436 | C | 1437 | U | 1438 | U | 1440 | C | 1441 | C | 1442 | A | 1443 | G | 1444 | U | 1445 | C | 1446 | C | 1447 | G | 1448 | cWW | ncBW | ||
| 2 | HL_4LVZ_001 | 4LVZ | 0.9723 | 1 | A | THF riboswitch | A | 33 | A | 34 | U | 35 | G | 37 | G | 38 | A | 39 | U | 40 | G | 41 | U | 42 | C | 43 | G | 44 | U | 45 | cWW | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUCUCCAGUCCG | 1 |
| AAUGGGAUGUCGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUCUCCAGUCC | 1 |
| AUGGGAUGUCG | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-cWW-R-tWH-R-R-R-R-R
- Heat map statistics
- Min 0.97 | Avg 0.49 | Max 0.97
Coloring options: