#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 51-5
1 HL_3J7P_0323J7P0.28072Pseudoknot geometry with 3' bulge (H)5 LSU rRNAA2420C2422A2423G2424U2426cWW
2 HL_5FDU_0375FDU0.235821A LSU rRNAG1538A1540A1541A1542C1544cWW
3 HL_3J9W_0733J9W0.24632Pseudoknot geometry with 3' bulge (H)BA LSU rRNAG1538A1540A1541A1542C1544cWW
4 HL_5J7L_1705J7L0.20192Pseudoknot geometry with 3' bulgeDA LSU rRNAG1492A1494A1495A1496C1498cWW
5 HL_5AJ0_0355AJ00.24982Pseudoknot geometry with 3' bulge (H)A2 LSU rRNAA2399C2401A2402G2403U2405cWW
6 HL_4V8P_1914V8P0.27582Pseudoknot geometry with 3' bulge (H)F1 LSU rRNAA1532C1534A1535A1536U1538cWW
7 HL_4V88_1454V880.23442Pseudoknot geometry with 3' bulge (H)A5 LSU rRNAA1506C1508A1509G1510U1512cWW
8 HL_4V91_0324V910.20082Pseudoknot geometry with 3' bulge (H)1 LSU rRNAA1506C1508A1509G1510U1512cWW
9 HL_4IOA_0324IOA0.00002X LSU rRNAG1337U1339C1340G1341C1343cWW
10 HL_5FDU_0335FDU0.063921A LSU rRNAG1370U1372C1373G1374C1376cWW
11 HL_4V9F_0354V9F0.23662Pseudoknot geometry with 3' bulge0 LSU rRNAG1430U1432G1433A1434C1436cWW
12 HL_5J7L_1665J7L0.26812Pseudoknot geometry with 3' bulgeDA LSU rRNAG1324U1326A1327A1328C1330cWW
13 HL_3J9W_0693J9W0.29292Pseudoknot geometry with 3' bulge (H)BA LSU rRNAG1363U1365C1366G1367C1369ncWW
14 HL_4IOA_0404IOA0.60171X LSU rRNAU1647C1648A1649A1650G1652cWW
15 HL_5FDU_0405FDU0.661111A LSU rRNAC1677A1678A1679G1680G1682cWW

3D structures

Complete motif including flanking bases
SequenceCounts
AGCAGUU4
GCAAAUC3
GGUCGUC2
AGCAAUU1
GCUGAUC1
GUUAAUC1
GCUCGUC1
UCAAUG1
CAAGAG1
Non-Watson-Crick part of the motif
SequenceCounts
GCAGU4
CAAAU3
GUCGU2
GCAAU1
CUGAU1
UUAAU1
CUCGU1
CAAU1
AAGA1

Release history

Release2.0
Date2017-04-24
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Pseudoknot geometry with 3' bulge (H) (7)
  • (5)
  • Pseudoknot geometry with 3' bulge (3)
  • Basepair signature
    cWW-R-R
    Heat map statistics
    Min 0.06 | Avg 0.34 | Max 0.77
    Help

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