Motif HL_36830.1 Version HL_36830.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3J7P_032 | 3J7P | 0.2807 | 2 | Pseudoknot geometry with 3' bulge (H) | 5 | LSU rRNA | A | 2420 | C | 2422 | A | 2423 | G | 2424 | U | 2426 | cWW |
| 2 | HL_5FDU_037 | 5FDU | 0.2358 | 2 | 1A | LSU rRNA | G | 1538 | A | 1540 | A | 1541 | A | 1542 | C | 1544 | cWW | |
| 3 | HL_3J9W_073 | 3J9W | 0.2463 | 2 | Pseudoknot geometry with 3' bulge (H) | BA | LSU rRNA | G | 1538 | A | 1540 | A | 1541 | A | 1542 | C | 1544 | cWW |
| 4 | HL_5J7L_170 | 5J7L | 0.2019 | 2 | Pseudoknot geometry with 3' bulge | DA | LSU rRNA | G | 1492 | A | 1494 | A | 1495 | A | 1496 | C | 1498 | cWW |
| 5 | HL_5AJ0_035 | 5AJ0 | 0.2498 | 2 | Pseudoknot geometry with 3' bulge (H) | A2 | LSU rRNA | A | 2399 | C | 2401 | A | 2402 | G | 2403 | U | 2405 | cWW |
| 6 | HL_4V8P_191 | 4V8P | 0.2758 | 2 | Pseudoknot geometry with 3' bulge (H) | F1 | LSU rRNA | A | 1532 | C | 1534 | A | 1535 | A | 1536 | U | 1538 | cWW |
| 7 | HL_4V88_145 | 4V88 | 0.2344 | 2 | Pseudoknot geometry with 3' bulge (H) | A5 | LSU rRNA | A | 1506 | C | 1508 | A | 1509 | G | 1510 | U | 1512 | cWW |
| 8 | HL_4V91_032 | 4V91 | 0.2008 | 2 | Pseudoknot geometry with 3' bulge (H) | 1 | LSU rRNA | A | 1506 | C | 1508 | A | 1509 | G | 1510 | U | 1512 | cWW |
| 9 | HL_4IOA_032 | 4IOA | 0.0000 | 2 | X | LSU rRNA | G | 1337 | U | 1339 | C | 1340 | G | 1341 | C | 1343 | cWW | |
| 10 | HL_5FDU_033 | 5FDU | 0.0639 | 2 | 1A | LSU rRNA | G | 1370 | U | 1372 | C | 1373 | G | 1374 | C | 1376 | cWW | |
| 11 | HL_4V9F_035 | 4V9F | 0.2366 | 2 | Pseudoknot geometry with 3' bulge | 0 | LSU rRNA | G | 1430 | U | 1432 | G | 1433 | A | 1434 | C | 1436 | cWW |
| 12 | HL_5J7L_166 | 5J7L | 0.2681 | 2 | Pseudoknot geometry with 3' bulge | DA | LSU rRNA | G | 1324 | U | 1326 | A | 1327 | A | 1328 | C | 1330 | cWW |
| 13 | HL_3J9W_069 | 3J9W | 0.2929 | 2 | Pseudoknot geometry with 3' bulge (H) | BA | LSU rRNA | G | 1363 | U | 1365 | C | 1366 | G | 1367 | C | 1369 | ncWW |
| 14 | HL_4IOA_040 | 4IOA | 0.6017 | 1 | X | LSU rRNA | U | 1647 | C | 1648 | A | 1649 | A | 1650 | G | 1652 | cWW | |
| 15 | HL_5FDU_040 | 5FDU | 0.6611 | 1 | 1A | LSU rRNA | C | 1677 | A | 1678 | A | 1679 | G | 1680 | G | 1682 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGCAGUU | 4 |
| GCAAAUC | 3 |
| GGUCGUC | 2 |
| AGCAAUU | 1 |
| GCUGAUC | 1 |
| GUUAAUC | 1 |
| GCUCGUC | 1 |
| UCAAUG | 1 |
| CAAGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCAGU | 4 |
| CAAAU | 3 |
| GUCGU | 2 |
| GCAAU | 1 |
| CUGAU | 1 |
| UUAAU | 1 |
| CUCGU | 1 |
| CAAU | 1 |
| AAGA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Pseudoknot geometry with 3' bulge (H) (7)
- (5)
- Pseudoknot geometry with 3' bulge (3)
- Basepair signature
- cWW-R-R
- Heat map statistics
- Min 0.06 | Avg 0.34 | Max 0.77
Coloring options: