Motif HL_38216.1 Version HL_38216.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V8P_114 | 4V8P | 0.2794 | 2 | Pseudoknot geometry with 3' bulge (H) | D1 | A | 1532 | C | 1534 | A | 1535 | A | 1536 | U | 1538 | cWW |
| 2 | HL_4Y4O_139 | 4Y4O | 0.2499 | 2 | 2A | G | 1492 | A | 1494 | A | 1495 | A | 1496 | C | 1498 | cWW | |
| 3 | HL_5J7L_170 | 5J7L | 0.1953 | 2 | Pseudoknot geometry with 3' bulge | DA | G | 1492 | A | 1494 | A | 1495 | A | 1496 | C | 1498 | cWW |
| 4 | HL_4Y4O_135 | 4Y4O | 0.0796 | 2 | 2A | G | 1324 | U | 1326 | C | 1327 | G | 1328 | C | 1330 | cWW | |
| 5 | HL_4IOA_032 | 4IOA | 0.0766 | 2 | X | G | 1337 | U | 1339 | C | 1340 | G | 1341 | C | 1343 | cWW | |
| 6 | HL_4WF9_033 | 4WF9 | 0.0000 | 2 | Pseudoknot geometry with 3' bulge | X | G | 1361 | U | 1363 | C | 1364 | G | 1365 | C | 1367 | cWW |
| 7 | HL_4V9F_035 | 4V9F | 0.1923 | 2 | Pseudoknot geometry with 3' bulge | 0 | G | 1430 | U | 1432 | G | 1433 | A | 1434 | C | 1436 | cWW |
| 8 | HL_5J7L_166 | 5J7L | 0.2604 | 2 | Pseudoknot geometry with 3' bulge | DA | G | 1324 | U | 1326 | A | 1327 | A | 1328 | C | 1330 | cWW |
| 9 | HL_4IOA_040 | 4IOA | 0.5717 | 1 | X | U | 1647 | C | 1648 | A | 1649 | A | 1650 | G | 1652 | cWW | |
| 10 | HL_4Y4O_143 | 4Y4O | 0.6247 | 1 | 2A | C | 1631 | A | 1631|||A | A | 1632 | G | 1633 | G | 1635 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCAAAUC | 2 |
| GGUCGUC | 2 |
| AGCAAUU | 1 |
| GCUCGUC | 1 |
| GCUGAUC | 1 |
| GUUAAUC | 1 |
| UCAAUG | 1 |
| CAAGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAAAU | 2 |
| GUCGU | 2 |
| GCAAU | 1 |
| CUCGU | 1 |
| CUGAU | 1 |
| UUAAU | 1 |
| CAAU | 1 |
| AAGA | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Pseudoknot geometry with 3' bulge (4)
- Pseudoknot geometry with 3' bulge (H) (1)
- Basepair signature
- cWW-R-R
- Heat map statistics
- Min 0.06 | Avg 0.35 | Max 0.77
Coloring options: