Motif HL_38453.1 Version HL_38453.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-12 | 3-11 | 4-10 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3J7A_036 | 3J7A | 0.0000 | 1 | 7 | tRNA | G | 27 | C | 28 | G | 29 | G | 30 | G | 31 | C | 33 | U | 34 | C | 35 | A | 36 | U | 37 | A | 38 | A | 39 | U | 40 | ncWW | ncWWa | cWW | ncWWa |
| 2 | HL_5D5L_011 | 5D5L | 0.6951 | 3 | D | PreQ1-II riboswitch | U | 28 | A | 29 | C | 30 | U | 31 | U | 32 | U | 36 | C | 37 | C | 38 | U | 39 | U | 40 | U | 41 | G | 42 | A | 43 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCGGGUCUCAUAAU | 1 |
| UACUUAUUUCCUUUGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGGGUCUCAUAA | 1 |
| ACUUAUUUCCUUUG | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-cWW-cWW-R-R-R-R-R-R
- Heat map statistics
- Min 0.70 | Avg 0.35 | Max 0.70
Coloring options: