Motif HL_39203.2 Version HL_39203.2 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1VX6_022 | 1VX6 | 0.0949 | 1 | A | 28S ribosomal RNA | G | 1029 | C | 1030 | G | 1031 | A | 1033 | A | 1034 | G | 1035 | A | 1036 | C | 1037 | cWW | cWW | tSW |
| 2 | HL_3U5H_021 | 3U5H | 0.0000 | 1 | 5 | 25S rRNA | G | 910 | C | 911 | G | 912 | A | 914 | A | 915 | G | 916 | A | 917 | C | 918 | cWW | cWW | tSW |
| 3 | HL_4A1B_022 | 4A1B | 0.0884 | 1 | 1 | 26S RRNA | G | 935 | C | 936 | G | 937 | A | 939 | A | 940 | G | 941 | A | 942 | C | 943 | cWW | cWW | tSW |
| 4 | HL_4CUV_021 | 4CUV | 0.0950 | 1 | 1 | 25S RRNA | G | 910 | C | 911 | G | 912 | A | 914 | A | 915 | G | 916 | A | 917 | C | 918 | cWW | cWW | tSW |
| 5 | HL_4W21_021 | 4W21 | 0.2285 | 1 | 5 | 28S ribosomal RNA | G | 1627 | C | 1628 | G | 1629 | A | 1631 | A | 1632 | G | 1633 | A | 1634 | C | 1635 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCGAAAGAC | 5 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGAAAGA | 5 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-09 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_39203.2 | Only in the parent motif |
|---|---|---|---|
| HL_39203.1 Compare | HL_3U5H_021, HL_4CUV_021, HL_4A1B_022, HL_1VX6_022 | HL_4W21_021 | HL_1VWW_021 |
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-cWW-R-tSW-R
- Heat map statistics
- Min 0.09 | Avg 0.12 | Max 0.24
Coloring options: