Motif HL_39778.1 Version HL_39778.1 of this group appears in releases 3.2 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2OEU_002 | 2OEU | 0.6495 | 2 | A | Hammerhead Ribozyme | C | 25 | C | 26 | A | 27 | U | 30 | A | 31 | G | 32 | cWW | |
| 2 | HL_4KR9_002 | 4KR9 | 0.6635 | 0 | M | RNA (39-MER) | G | 19 | G | 20 | A | 21 | A | 22 | A | 23 | C | 24 | cWW | |
| 3 | HL_4XWF_001 | 4XWF | 0.4247 | 0 | A | ZMP/ZTP riboswitch | G | 24 | G | 25 | A | 26 | A | 27 | A | 28 | C | 29 | cWW | |
| 4 | HL_3ADD_003 | 3ADD | 0.2427 | 0 | C | Selenocysteine transfer RNA | C | 47|||D | G | 47|||E | A | 47|||F | G | 47|||G | U | 47|||H | G | 47|||I | cWW | |
| 5 | HL_1Y0Q_005 | 1Y0Q | 0.0000 | 0 | A | Group I catalytic intron | C | 146 | A | 147 | A | 148 | G | 149 | U | 150 | G | 151 | cWW | ncsS |
| 6 | HL_4RUM_001 | 4RUM | 0.5287 | 1 | A | NiCo riboswitch | C | 27 | A | 28 | G | 29 | G | 31 | C | 32 | G | 33 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAAAC | 2 |
| CCAAAUAG | 1 |
| CGAGUG | 1 |
| CAAGUG | 1 |
| CAGAGCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAA | 2 |
| CAAAUA | 1 |
| GAGU | 1 |
| AAGU | 1 |
| AGAGC | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-R-R-R
- Heat map statistics
- Min 0.24 | Avg 0.52 | Max 0.95
Coloring options: