Motif HL_39942.4 Version HL_39942.4 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3U5H_063 | 3U5H | 0.5035 | 1 | 5 | 25S rRNA | A | 2897 | C | 2899 | A | 2900 | G | 2901 | A | 2902 | A | 2903 | U | 2904 | cWW | |
| 2 | HL_4CUV_063 | 4CUV | 0.4727 | 1 | 1 | 25S RRNA | A | 2897 | C | 2899 | A | 2900 | G | 2901 | A | 2902 | A | 2903 | U | 2904 | cWW | |
| 3 | HL_4A1B_062 | 4A1B | 0.2832 | 1 | 1 | 26S RRNA | A | 2885 | C | 2887 | A | 2888 | G | 2889 | A | 2890 | A | 2891 | U | 2892 | cWW | |
| 4 | HL_2QBG_063 | 2QBG | 0.1663 | 1 | B | 23S rRNA | U | 2528 | A | 2530 | A | 2531 | G | 2532 | U | 2533 | A | 2534 | G | 2535 | cWW | |
| 5 | HL_4NVV_059 | 4NVV | 0.1642 | 1 | A | 23S Ribosomal RNA | U | 2540 | A | 2542 | A | 2543 | G | 2544 | A | 2545 | A | 2546 | G | 2547 | cWW | |
| 6 | HL_4IOA_060 | 4IOA | 0.0000 | 1 | X | LSU rRNA | U | 2507 | A | 2509 | A | 2510 | G | 2511 | A | 2512 | A | 2513 | G | 2514 | cWW | |
| 7 | HL_1S72_063 | 1S72 | 0.1477 | 1 | 0 | LSU rRNA | U | 2563 | C | 2565 | A | 2566 | G | 2567 | A | 2568 | A | 2569 | G | 2570 | cWW | |
| 8 | HL_1VW3_052 | 1VW3 | 0.1738 | 2 | A | 21S ribosomal RNA | U | 2794 | U | 2797 | A | 2798 | A | 2799 | A | 2800 | A | 2801 | G | 2802 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGCAGAAU | 3 |
| UGAAGAAG | 2 |
| UGAAGUAG | 1 |
| UGCAGAAG | 1 |
| UUGUAAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCAGAA | 4 |
| GAAGAA | 2 |
| GAAGUA | 1 |
| UGUAAAA | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-15 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_39942.4 | Only in the parent motif |
|---|---|---|---|
| HL_39942.3 Compare | HL_1VW3_052, HL_1S72_063, HL_4A1B_062, HL_2QBG_063, HL_4NVV_059, HL_4IOA_060, HL_3U5H_063 | HL_4CUV_063 |
Children motifs
| Child motif | Common motif instances | Only in HL_39942.4 | Only in the child motif |
|---|---|---|---|
| HL_37020.1 Compare | HL_4CUV_063, HL_1VW3_052, HL_1S72_063, HL_4A1B_062, HL_2QBG_063, HL_4NVV_059, HL_4IOA_060, HL_3U5H_063 | HL_1VW3_053, HL_1VX6_063, HL_4CUV_064, HL_4A1B_063, HL_2QBG_064, HL_4NVV_060, HL_1VX2_035, HL_1FJG_002, HL_3U5H_064, HL_1VX6_062, HL_4IOA_061 |
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