HL_4IOA_060

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases (A, C, G, U)

2508G

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92681.3

Basepair signature

cWW-R-R-R-R

Number of instances in this motif group

7

Unit IDs

4IOA|1|X|U|2507
4IOA|1|X|G|2508
4IOA|1|X|A|2509
4IOA|1|X|A|2510
4IOA|1|X|G|2511
4IOA|1|X|A|2512
4IOA|1|X|A|2513
4IOA|1|X|G|2514

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain E

50S ribosomal protein L6