HL_4A1B_062

3D structure

PDB id

4A1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6. This file contains 26S rRNA and proteins of molecule 3.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases (A, C, G, U)

2886G

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90506.1

Basepair signature

cWW-R-R-R-R

Number of instances in this motif group

9

Unit IDs

4A1B|1|1|A|2885
4A1B|1|1|G|2886
4A1B|1|1|C|2887
4A1B|1|1|A|2888
4A1B|1|1|G|2889
4A1B|1|1|A|2890
4A1B|1|1|A|2891
4A1B|1|1|U|2892

Current chains

Chain 1

26S RRNA

Nearby chains

Chain K

UBIQUITIN-60S RIBOSOMAL PROTEIN L40