Motif HL_40792.1 Version HL_40792.1 of this group appears in releases 0.1 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3ADC_001 | 3ADC | 0.1795 | 1 | tRNA D-loop (H) | C | Selenocysteine transfer RNA | G | 15 | U | 16 | G | 19 | U | 20 | C | 20|||A | cWW | cSH |
| 2 | HL_3ADC_005 | 3ADC | 0.1663 | 1 | tRNA D-loop (H) | D | Selenocysteine transfer RNA | G | 15 | U | 16 | G | 19 | U | 20 | C | 20|||A | cWW | cSH |
| 3 | HL_3A3A_001 | 3A3A | 0.1556 | 1 | tRNA D-loop (H) | A | Selenocysteine transfer RNA | G | 15 | U | 16 | G | 19 | U | 20 | C | 20|||A | cWW | ncSH |
| 4 | HL_3ADD_005 | 3ADD | 0.0000 | 1 | tRNA D-loop (H) | D | Selenocysteine transfer RNA | G | 15 | U | 16 | G | 19 | U | 20 | C | 20|||A | cWW | cSH |
| 5 | HL_3ADD_001 | 3ADD | 0.1698 | 1 | tRNA D-loop | C | Selenocysteine transfer RNA | G | 15 | U | 16 | G | 19 | U | 20 | C | 20|||A | cWW | cSH |
| 6 | HL_3AM1_001 | 3AM1 | 0.2654 | 1 | tRNA D-loop | B | ASL-truncated tRNA | U | 18 | U | 19 | G | 21 | U | 22 | A | 23 | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGGUC | 5 |
| UUGGUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGGU | 6 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_40792.1 | Only in the child motif |
|---|---|---|---|
| HL_06643.1 Compare | HL_3ADD_001, HL_3AM1_001, HL_3ADC_001 | HL_3A3A_001, HL_3ADD_005, HL_3ADC_005 | HL_3RG5_001, HL_2QBG_002 |
- Annotations
-
- tRNA D-loop (H) (4)
- tRNA D-loop (2)
- Basepair signature
- Heat map statistics
- Min 0.05 | Avg 0.18 | Max 0.35
Coloring options: