Motif HL_41207.1 Version HL_41207.1 of this group appears in releases 3.48 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6MJ0_006 | 6MJ0 | 0.0000 | 0 | B | tRNA-like 3' UTR element | U | 12 | C | 13 | U | 14 | U | 15 | U | 16 | A | 17 | A | 18 | A | 19 | A | 20 | cWW | cSW | ncSH | |
| 2 | HL_4V88_219 | 4V88 | 0.9147 | 3 | A6 | SSU rRNA | A | 1550 | U | 1551 | U | 1552 | G | 1553 | U | 1554 | A | 1555 | A | 1556 | U | 1560 | U | 1561 | cWW | ncWH | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCUUUAAAA | 1 |
| AUUGUAAUUAUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUUUAAA | 1 |
| UUGUAAUUAU | 1 |
- Annotations
- Basepair signature
- cWW-cSW-tWH-R-R-R
- Heat map statistics
- Min 0.91 | Avg 0.46 | Max 0.91
Coloring options: