Motif HL_41768.1 Version HL_41768.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 6-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4YCP_001 | 4YCP | 0.8376 | 1 | B | C | 13 | A | 14 | A | 15 | U | 16 | U | 17 | G | 19 | U | 20 | A | 21 | G | 22 | cWW | cWS | cSH |
| 2 | HL_4YCO_001 | 4YCO | 0.8138 | 1 | D | C | 13 | A | 14 | G | 15 | U | 16 | C | 17 | G | 19 | U | 20 | A | 21 | G | 22 | cWW | cWS | cSH |
| 3 | HL_4WJ4_001 | 4WJ4 | 0.0000 | 1 | B | C | 13 | A | 14 | G | 15 | U | 16 | C | 17 | G | 19 | U | 20 | A | 21 | G | 22 | cWW | ncSW | |
| 4 | HL_4WJ4_004 | 4WJ4 | 0.0000 | 1 | B | C | 13||||5_455 | A | 14||||5_455 | G | 15||||5_455 | U | 16||||5_455 | C | 17||||5_455 | G | 19||||5_455 | U | 20||||5_455 | A | 21||||5_455 | G | 22||||5_455 | cWW | ncSW | |
| 5 | HL_2CT8_004 | 2CT8 | 0.6093 | 2 | D | C | 13 | A | 14 | G | 15 | C | 16 | U | 17 | G | 19 | U | 20 | A | 21 | G | 22 | cWW | ||
| 6 | HL_3A2K_004 | 3A2K | 0.6593 | 2 | D | C | 13 | A | 14 | G | 15 | U | 16 | U | 17 | G | 19 | U | 20 | A | 22 | G | 23 | cWW | ncWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGUCGGUAG | 3 |
| CAAUUGGUAG | 1 |
| CAGCUGGUCAG | 1 |
| CAGUUGGUUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGUCGGUA | 3 |
| AAUUGGUA | 1 |
| AGCUGGUCA | 1 |
| AGUUGGUUA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-cWS-cSH-R-R-R
- Heat map statistics
- Min 0.11 | Avg 0.56 | Max 1.00
Coloring options: