Motif HL_42436.1 Version HL_42436.1 of this group appears in releases 0.3 to 1.18

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8		9		10		11		12		13		14		15	1-15	3-14	3-15
1	HL_3Q3Z_001	3Q3Z	0.0000	1	V	Cyclic di-GMP-II riboswitch	U	31	A	33	A	34	A	35	U	36	U	37	G	38	G	39	G	40	C	41	A	42	C	43	U	44	U	45	G	46	cWW	tHW	tWS
2	HL_3Q3Z_002	3Q3Z	0.1952	1	A	Cyclic di-GMP-II riboswitch	U	31	A	33	A	34	A	35	U	36	U	37	G	38	G	39	G	40	C	41	A	42	C	43	U	44	U	45	G	46	cWW	tHW	tWS

3D structures

Complete motif including flanking bases

Sequence	Counts
UUAAAUUGGGCACUUG	2

Non-Watson-Crick part of the motif

Sequence	Counts
UAAAUUGGGCACUU	2

Release history

Release	0.3	0.4	0.5	0.6	0.7	0.8	1.0	1.1	1.2	1.3	1.4	1.5	1.6	1.7	1.8	1.9	1.10	1.11	1.12	1.13	1.14	1.15	1.16	1.17	1.18
Date	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-03-04	2013-04-06	2013-05-04	2013-06-01	2013-07-03	2013-08-03	2013-08-31	2013-09-28	2013-11-04	2013-12-07	2014-01-04	2014-02-01	2014-03-01	2014-03-29	2014-04-27	2014-06-15	2014-07-26	2014-09-06	2014-10-09
Status	New id, no parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (2)
Basepair signature: cWW-tHW-R-R-R-R-R-R-R-R-R-R
Heat map statistics: Min 0.20 | Avg 0.10 | Max 0.20

Help

Coloring options: Nucleotide numbers

Copyright 2025 BGSU RNA group. Page generated in 0.1779 s