Motif HL_42514.1 Version HL_42514.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2AZX_010 | 2AZX | 0.3163 | 4 | C | 72-MER | C | 513||||7_555 | A | 514||||7_555 | A | 515||||7_555 | A | 521||||7_555 | G | 522||||7_555 | cWW | cWS | |
| 2 | HL_2AZX_001 | 2AZX | 0.3163 | 4 | C | 72-MER | C | 513 | A | 514 | A | 515 | A | 521 | G | 522 | cWW | cWS | |
| 3 | HL_4MGN_002 | 4MGN | 0.2224 | 4 | B | tRNA-glycine | C | 13 | A | 14 | G | 15 | A | 20 | G | 21 | cWW | ncWS | |
| 4 | HL_4LCK_006 | 4LCK | 0.0000 | 4 | E | tRNA | C | 13 | A | 14 | G | 15 | A | 20 | G | 21 | cWW | ncWw | |
| 5 | HL_1IVS_001 | 1IVS | 0.2159 | 4 | C | tRNA (Val) | C | 913 | A | 914 | G | 915 | A | 920 | G | 921 | cWW | ||
| 6 | HL_3AMU_001 | 3AMU | 0.3836 | 7 | tRNA D-loop | B | tRNA | U | 13 | A | 14 | G | 15 | A | 21|||C | G | 22 | cWW | ncWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAUGGUAG | 2 |
| CAGUGGUAG | 2 |
| CAGCGGAAG | 1 |
| UAGCCAGGUCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAUGGUA | 2 |
| AGUGGUA | 2 |
| AGCGGAA | 1 |
| AGCCAGGUCA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- tRNA D-loop (1)
- Basepair signature
- cWW-cWS-R
- Heat map statistics
- Min 0.22 | Avg 0.28 | Max 0.51
Coloring options: