Motif HL_42580.1 Version HL_42580.1 of this group appears in releases 0.1 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3O30_006 | 3O30 | 0.7797 | 1 | 1 | SSU rRNA | C | 275 | C | 276 | U | 277 | U | 278 | U | 280 | G | 281 | cWW | |
| 2 | HL_2ZZM_002 | 2ZZM | 0.0000 | 3 | B | tRNA | G | 31 | C | 32 | U | 34 | G | 36 | A | 38 | C | 39 | cWW | ncWW |
| 3 | HL_361D_002 | 361D | 0.6461 | 0 | B | RNA (20-mer) | G | 86 | G | 87 | C | 88 | G | 89 | A | 89|||A | C | 90 | cWW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUUGUG | 1 |
| GCCUAGGAC | 1 |
| GGCGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUUGU | 1 |
| CCUAGGA | 1 |
| GCGA | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_42580.1 | Only in the child motif |
|---|---|---|---|
| HL_19221.2 Compare | HL_361D_002 | HL_2ZZM_002, HL_3O30_006 | HL_2A64_001, HL_3DHS_001 |
| HL_68435.1 Compare | HL_2ZZM_002 | HL_3O30_006, HL_361D_002 |
Coloring options: