#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 61-62-5
1 HL_3O30_0063O300.77971118S ribosomal RNAC275C276U277U278U280G281cWW
2 HL_2ZZM_0022ZZM0.00003BRNA (84-MER)G31C32U34G36A38C39cWWncWW
3 HL_361D_002361D0.64610BRNA (20-mer)G86G87C88G89A89|||AC90cWWntSH

3D structures

Complete motif including flanking bases
SequenceCounts
CCUUGUG1
GCCUAGGAC1
GGCGAC1
Non-Watson-Crick part of the motif
SequenceCounts
CUUGU1
CCUAGGA1
GCGA1

Release history

Release0.10.2
Date2011-12-082011-12-08
StatusNew id, no parentsExact match

Parent motifs

This motif has no parent motifs.

Children motifs

Child motifCommon motif instancesOnly in HL_42580.1Only in the child motif
HL_19221.2
Compare
HL_361D_002HL_2ZZM_002, HL_3O30_006HL_2A64_001, HL_3DHS_001
HL_68435.1
Compare
HL_2ZZM_002HL_3O30_006, HL_361D_002
Annotations
  • (3)
  • Basepair signature
    Heat map statistics
    Min 0.65 | Avg 0.50 | Max 0.82
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