Motif HL_43410.1 Version HL_43410.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5A2Q_020 | 5A2Q | 0.9134 | 0 | 2 | A | 1113 | U | 1114 | U | 1115 | C | 1116 | C | 1117 | C | 1118 | A | 1119 | U | 1120 | cWW | |
| 2 | HL_4V9F_002 | 4V9F | 0.0000 | 1 | Pseudoknot geometry | 0 | C | 83 | G | 84 | C | 85 | A | 86 | G | 88 | G | 89 | A | 90 | G | 91 | cWW |
| 3 | HL_3J9W_037 | 3J9W | 0.5451 | 1 | Pseudoknot geometry (H) | BA | U | 87 | G | 88 | U | 89 | A | 90 | G | 92 | C | 93 | A | 94 | A | 95 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUUCCCAU | 1 |
| CGCACGGAG | 1 |
| UGUAAGCAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUCCCA | 1 |
| GCACGGA | 1 |
| GUAAGCA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Pseudoknot geometry (H) (1)
- Pseudoknot geometry (1)
- (1)
- Basepair signature
- cWW-R-R-R-R-R
- Heat map statistics
- Min 0.55 | Avg 0.54 | Max 0.97
Coloring options: