Motif HL_43610.3 Version HL_43610.3 of this group appears in releases 3.26 to 3.36

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6	1-6	2-5
1	HL_4ANG_001	4ANG	0.0000	1	R	RNA (20-mer)	G	7\|\|A\|\|P_1	G	8\|\|A\|\|P_1	A	9\|\|A\|\|P_1	G	10\|\|A\|\|P_1	C	14\|\|A\|\|P_1	C	15\|\|A\|\|P_1	cWW	ncWW
2	HL_4ANG_005	4ANG	0.0000	1	R	RNA (20-mer)	G	7\|\|A\|\|P_P	G	8\|\|A\|\|P_P	A	9\|\|A\|\|P_P	G	10\|\|A\|\|P_P	C	14\|\|A\|\|P_P	C	15\|\|A\|\|P_P
3	HL_3SKL_006	3SKL	0.6649	2	B	RNA (66-MER)	A	65	A	66	C	67	C	68	U	71	U	72	cWW	ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGAGACC	2
AACCUAUU	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAGAC	2
ACCUAU	1

Release history

Release	3.26	3.27	3.28	3.29	3.30	3.31	3.32	3.33	3.34	3.35	3.36
Date	2019-12-11	2020-01-08	2020-02-05	2020-03-04	2020-04-01	2020-04-29	2020-05-27	2020-06-24	2020-07-22	2020-08-19	2020-09-16
Status	Updated, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (3)
Basepair signature: cWW-cWW-R
Heat map statistics: Min 0.66 | Avg 0.30 | Max 0.66

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