Motif HL_43610.3 Version HL_43610.3 of this group appears in releases 3.26 to 3.36
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4ANG_001 | 4ANG | 0.0000 | 1 | R | RNA (20-mer) | G | 7||A||P_1 | G | 8||A||P_1 | A | 9||A||P_1 | G | 10||A||P_1 | C | 14||A||P_1 | C | 15||A||P_1 | cWW | ncWW |
| 2 | HL_4ANG_005 | 4ANG | 0.0000 | 1 | R | RNA (20-mer) | G | 7||A||P_P | G | 8||A||P_P | A | 9||A||P_P | G | 10||A||P_P | C | 14||A||P_P | C | 15||A||P_P | ||
| 3 | HL_3SKL_006 | 3SKL | 0.6649 | 2 | B | 2dG-I riboswitch aptamer | A | 65 | A | 66 | C | 67 | C | 68 | U | 71 | U | 72 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAGACC | 2 |
| AACCUAUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAGAC | 2 |
| ACCUAU | 1 |
Release history
| Release | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-R
- Heat map statistics
- Min 0.66 | Avg 0.30 | Max 0.66
Coloring options: