Motif HL_43656.2 Version HL_43656.2 of this group appears in releases 3.80 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6CZR_083 | 6CZR | 0.3667 | 3 | 1a | SSU rRNA | C | 453 | G | 454 | A | 458 | G | 459 | cWW | ntSH | |
| 2 | HL_4LFB_012 | 4LFB | 0.3542 | 3 | A | SSU rRNA | C | 458 | G | 459 | A | 463 | G | 474 | cWW | tSH | |
| 3 | HL_7RQB_043 | 7RQB | 0.0000 | 3 | 1A | LSU rRNA | U | 1720 | G | 1721 | A | 1741 | G | 1742 | cWW | ||
| 4 | HL_8F4O_004 | 8F4O | 0.2171 | 0 | B | TPP riboswitch (THI element) | G | 66 | A | 67 | G | 72 | C | 73 | cWW | ||
| 5 | HL_5TBW_063 | 5TBW | 0.7488 | 3 | 1 | LSU rRNA | U | 2920 | U | 2921 | C | 2925 | A | 2926 | cWW | ||
| 6 | HL_8C3A_064 | 8C3A | 0.8996 | 3 | 1 | LSU rRNA | U | 2892 | U | 2893 | C | 2897 | A | 2898 | cWW | ||
| 7 | HL_7A0S_061 | 7A0S | 0.6071 | 3 | X | LSU rRNA | C | 2530 | U | 2531 | C | 2535 | G | 2536 | cWW | ||
| 8 | HL_4WF9_058 | 4WF9 | 0.6340 | 3 | X | LSU rRNA | C | 2578 | U | 2579 | C | 2583 | G | 2584 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGACGAG | 2 |
| UUGUUCA | 2 |
| CUGUUCG | 2 |
| UGAUGAG | 1 |
| GAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGUUC | 4 |
| GACGA | 2 |
| GAUGA | 1 |
| AG | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 |
|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
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