Motif HL_44506.1 Version HL_44506.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_9C75_001 | 9C75 | 0.6177 | 0 | R | Rev Response Element | C | 20 | A | 21 | A | 22 | U | 23 | G | 24 | cWW | ncHW |
| 2 | HL_8P9A_179 | 8P9A | 0.3760 | 2 | AR | LSU rRNA | C | 3193 | C | 3194 | U | 3196 | G | 3197 | G | 3199 | cWW | ncWW |
| 3 | HL_8OI5_017 | 8OI5 | 0.0000 | 1 | 1 | LSU rRNA | G | 759 | U | 760 | U | 762 | U | 763 | C | 764 | cWW | cwW |
| 4 | HL_8P9A_130 | 8P9A | 0.1796 | 1 | AR | LSU rRNA | G | 763 | U | 764 | U | 766 | U | 767 | C | 768 | cWW | cwW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAUG | 1 |
| CCUUGUG | 1 |
| GUGUUC | 1 |
| GUCUUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAU | 1 |
| CUUGU | 1 |
| UGUU | 1 |
| UCUU | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-cWW-F
- Heat map statistics
- Min 0.18 | Avg 0.38 | Max 0.70
Coloring options: