Motif HL_44730.1 Version HL_44730.1 of this group appears in releases 3.26 to 3.36
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5AMQ_001 | 5AMQ | 0.2428 | 3 | C | RNA | U | 3 | A | 4 | G | 5 | A | 9 | cWW | |
| 2 | HL_6CMN_001 | 6CMN | 0.1449 | 1 | D | Trans-Activation Response RNA Element | C | 30 | U | 31 | G | 32 | G | 34 | cWW | |
| 3 | HL_4LFB_004 | 4LFB | 0.0000 | 2 | A | SSU rRNA | C | 190|||B | C | 190|||C | U | 190|||D | G | 190|||G | cWW | |
| 4 | HL_6CZR_075 | 6CZR | 0.2250 | 2 | 1a | SSU rRNA | C | 187 | C | 188 | U | 189 | G | 192 | cWW | |
| 5 | HL_1H4S_002 | 1H4S | 0.2522 | 3 | T | tRNA | U | 32 | U | 33 | C | 34 | A | 38 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUUGG | 2 |
| UAGUGUA | 1 |
| CUGGG | 1 |
| UUCGGGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUUG | 2 |
| AGUGU | 1 |
| UGG | 1 |
| UCGGG | 1 |
Release history
| Release | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: