Motif HL_46891.1 Version HL_46891.1 of this group appears in releases 3.26 to 3.47

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8	1-8	2-6	2-7	3-4	3-5
1	HL_6UFM_006	6UFM	0.7555	0	Pseudoknot	B	RNA (98-MER)	G	80	G	81	U	82	G	83	A	84	G	85	C	86	C	87	cWW				ncSH
2	HL_6UFG_003	6UFG	0.6728	0	Pseudoknot	A	RNA (166-MER)	G	69	G	70	U	71	U	72	G	73	G	74	C	75	C	76	cWW	ncWH		ncSH
3	HL_6UFG_001	6UFG	0.7315	0		A	RNA (166-MER)	G	13	C	14	G	15	A	16	U	17	C	18	A	19	C	20	cWW		ntWW
4	HL_6UFH_001	6UFH	0.7298	0		A	RNA (167-MER)	G	13	C	14	G	15	A	16	U	17	C	18	A	19	C	20	cWW
5	HL_3R4F_002	3R4F	0.0000	0		A	pRNA	A	51	U	52	G	53	G	54	U	55	U	56	G	57	U	58	cWW		ncWW
6	HL_3R4F_004	3R4F	0.0000	0		A	pRNA	A	51\|\|\|\|15_545	U	52\|\|\|\|15_545	G	53\|\|\|\|15_545	G	54\|\|\|\|15_545	U	55\|\|\|\|15_545	U	56\|\|\|\|15_545	G	57\|\|\|\|15_545	U	58\|\|\|\|15_545	cWW		ncWW
7	HL_4V9F_055	4V9F	0.4420	1		0	LSU rRNA	C	2281	U	2282	G	2284	G	2285	G	2286	C	2287	G	2288	G	2289	cWW
8	HL_4IOA_052	4IOA	0.4924	1		X	LSU rRNA	C	2227	U	2228	G	2230	G	2231	G	2232	C	2233	G	2234	G	2235	cWW
9	HL_4WF9_049	4WF9	0.5009	1		X	LSU rRNA	C	2275	U	2276	G	2278	G	2279	G	2280	C	2281	G	2282	G	2283	cWW
10	HL_5TBW_054	5TBW	0.5827	1		1	LSU rRNA	C	2616	U	2617	G	2619	G	2620	G	2621	C	2622	G	2623	G	2624	cWW
11	HL_4V84_034	4V84	0.6091	0		AV	RNA (34-MER)	U	6185	U	6186	A	6187	G	6188	G	6189	U	6190	A	6191	G	6192	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUGGGGCGG	4
GCGAUCAC	2
AUGGUUGU	2
GGUGAGCC	1
GGUUGGCC	1
UUAGGUAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UGGGGCG	4
CGAUCA	2
UGGUUG	2
GUGAGC	1
GUUGGC	1
UAGGUA	1

Release history

Release	3.26	3.27	3.28	3.29	3.30	3.31	3.32	3.33	3.34	3.35	3.36	3.37	3.38	3.39	3.40	3.41	3.42	3.43	3.44	3.45	3.46	3.47
Date	2019-12-11	2020-01-08	2020-02-05	2020-03-04	2020-04-01	2020-04-29	2020-05-27	2020-06-24	2020-07-22	2020-08-19	2020-09-16	2020-10-14	2020-11-11	2020-12-09	2021-01-06	2021-02-03	2021-03-03	2021-03-31	2021-04-28	2021-05-26	2021-06-23	2021-07-21
Status	New id, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (9)
Pseudoknot (2)
Basepair signature: cWW-R-R-R-R-R
Heat map statistics: Min 0.11 | Avg 0.60 | Max 0.99

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