Motif HL_46891.1 Version HL_46891.1 of this group appears in releases 3.26 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-6 | 2-7 | 3-4 | 3-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6UFM_006 | 6UFM | 0.7555 | 0 | B | RNA (98-MER) | G | 80 | G | 81 | U | 82 | G | 83 | A | 84 | G | 85 | C | 86 | C | 87 | cWW | ncSH | ||||
| 2 | HL_6UFG_003 | 6UFG | 0.6728 | 0 | A | RNA (166-MER) | G | 69 | G | 70 | U | 71 | U | 72 | G | 73 | G | 74 | C | 75 | C | 76 | cWW | ncWH | ncSH | |||
| 3 | HL_6UFG_001 | 6UFG | 0.7315 | 0 | A | RNA (166-MER) | G | 13 | C | 14 | G | 15 | A | 16 | U | 17 | C | 18 | A | 19 | C | 20 | cWW | ntWW | ||||
| 4 | HL_6UFH_001 | 6UFH | 0.7298 | 0 | A | RNA (167-MER) | G | 13 | C | 14 | G | 15 | A | 16 | U | 17 | C | 18 | A | 19 | C | 20 | cWW | |||||
| 5 | HL_3R4F_002 | 3R4F | 0.0000 | 0 | A | pRNA | A | 51 | U | 52 | G | 53 | G | 54 | U | 55 | U | 56 | G | 57 | U | 58 | cWW | ncWW | ||||
| 6 | HL_3R4F_004 | 3R4F | 0.0000 | 0 | A | pRNA | A | 51||||15_545 | U | 52||||15_545 | G | 53||||15_545 | G | 54||||15_545 | U | 55||||15_545 | U | 56||||15_545 | G | 57||||15_545 | U | 58||||15_545 | cWW | ncWW | ||||
| 7 | HL_4V9F_055 | 4V9F | 0.4420 | 1 | 0 | LSU rRNA | C | 2281 | U | 2282 | G | 2284 | G | 2285 | G | 2286 | C | 2287 | G | 2288 | G | 2289 | cWW | |||||
| 8 | HL_4IOA_052 | 4IOA | 0.4924 | 1 | X | LSU rRNA | C | 2227 | U | 2228 | G | 2230 | G | 2231 | G | 2232 | C | 2233 | G | 2234 | G | 2235 | cWW | |||||
| 9 | HL_4WF9_049 | 4WF9 | 0.5009 | 1 | X | LSU rRNA | C | 2275 | U | 2276 | G | 2278 | G | 2279 | G | 2280 | C | 2281 | G | 2282 | G | 2283 | cWW | |||||
| 10 | HL_5TBW_054 | 5TBW | 0.5827 | 1 | 1 | LSU rRNA | C | 2616 | U | 2617 | G | 2619 | G | 2620 | G | 2621 | C | 2622 | G | 2623 | G | 2624 | cWW | |||||
| 11 | HL_4V84_034 | 4V84 | 0.6091 | 0 | AV | RNA (34-MER) | U | 6185 | U | 6186 | A | 6187 | G | 6188 | G | 6189 | U | 6190 | A | 6191 | G | 6192 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGGGGCGG | 4 |
| GCGAUCAC | 2 |
| AUGGUUGU | 2 |
| GGUGAGCC | 1 |
| GGUUGGCC | 1 |
| UUAGGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGGGGCG | 4 |
| CGAUCA | 2 |
| UGGUUG | 2 |
| GUGAGC | 1 |
| GUUGGC | 1 |
| UAGGUA | 1 |
Release history
| Release | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-R-R-R-R-R
- Heat map statistics
- Min 0.11 | Avg 0.60 | Max 0.99
Coloring options: