Motif HL_49089.1 Version HL_49089.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 2-8 | 3-7 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V4Q_115 | 4V4Q | 0.9840 | 1 | CA | SSU rRNA | G | 462 | U | 463 | U | 464 | A | 465 | A | 466 | A | 468 | C | 469 | C | 470 | cWW | ||||
| 2 | HL_3WC2_002 | 3WC2 | 0.0000 | 1 | P | 76mer-tRNA | A | 31 | C | 32 | U | 33 | G | 34 | U | 35 | G | 37 | A | 38 | U | 39 | cWW | cWW | ncSH | ||
| 3 | HL_4V91_012 | 4V91 | 0.7417 | 0 | 1 | LSU rRNA | G | 542 | C | 543 | C | 544 | U | 545 | C | 546 | G | 547 | G | 548 | U | 549 | ncWW | ncWW | ncWW | ncSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUAAUACC | 1 |
| ACUGUGGAU | 1 |
| GCCUCGGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAAUAC | 1 |
| CUGUGGA | 1 |
| CCUCGG | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-R-R-R
- Heat map statistics
- Min 0.74 | Avg 0.63 | Max 1.09
Coloring options: