Motif HL_49196.1 Version HL_49196.1 of this group appears in releases 3.2 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5J7L_140 | 5J7L | 0.9219 | 0 | DA | LSU rRNA | C | 225 | A | 226 | A | 227 | C | 228 | C | 229 | G | 230 | cWW | tSH |
| 2 | HL_5E6M_002 | 5E6M | 0.4991 | 3 | C | tRNA | A | 31 | U | 32 | U | 33 | C | 34 | U | 38 | U | 39 | cWW | cwW |
| 3 | HL_4QEI_005 | 4QEI | 0.0000 | 3 | C | tRNA | A | 31||||2_555 | U | 32||||2_555 | U | 33||||2_555 | C | 34||||2_555 | U | 38||||2_555 | U | 39||||2_555 | cWW | cwW |
| 4 | HL_4QEI_002 | 4QEI | 0.0000 | 3 | C | tRNA | A | 31 | U | 32 | U | 33 | C | 34 | U | 38 | U | 39 | cWW | cwW |
| 5 | HL_4Y4O_121 | 4Y4O | 0.8195 | 1 | 2A | LSU rRNA | C | 612 | G | 613 | U | 614 | U | 614|||A | A | 614|||C | G | 615 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUUCCCAUU | 3 |
| CAACCG | 1 |
| CGUUGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUCCCAU | 3 |
| AACC | 1 |
| GUUGA | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-cWW-R
- Heat map statistics
- Min 0.50 | Avg 0.57 | Max 0.97
Coloring options: