Motif HL_50248.1 Version HL_50248.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V88_183 | 4V88 | 0.3763 | 0 | A5 | LSU rRNA | C | 3240 | G | 3241 | G | 3242 | A | 3243 | A | 3244 | A | 3245 | G | 3246 | G | 3247 | cWW |
| 2 | HL_4V91_070 | 4V91 | 0.0000 | 0 | 1 | LSU rRNA | C | 3240 | G | 3241 | G | 3242 | A | 3243 | A | 3244 | A | 3245 | G | 3246 | G | 3247 | cWW |
| 3 | HL_3J7P_068 | 3J7P | 0.4300 | 0 | 5 | LSU rRNA | G | 4907 | G | 4908 | A | 4909 | G | 4910 | A | 4911 | G | 4912 | G | 4913 | C | 4914 | cWW |
| 4 | HL_5AJ0_072 | 5AJ0 | 0.7720 | 0 | A2 | LSU rRNA | G | 4865 | G | 4866 | A | 4867 | A | 4868 | A | 4869 | G | 4870 | G | 4871 | C | 4872 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGAAAGG | 2 |
| GGAGAGGC | 1 |
| GGAAAGGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAAAG | 2 |
| GAGAGG | 1 |
| GAAAGG | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-R-R-R-R-R
- Heat map statistics
- Min 0.38 | Avg 0.45 | Max 0.86
Coloring options: