Motif HL_50537.1 Version HL_50537.1 of this group appears in releases 3.2 to 3.11
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 2-8 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4WJ4_005 | 4WJ4 | 0.0000 | 1 | B | tRNA | A | 31||||5_455 | C | 32||||5_455 | U | 33||||5_455 | G | 34||||5_455 | U | 35||||5_455 | U | 36||||5_455 | A | 38||||5_455 | U | 39||||5_455 | cWW | ncWW | |
| 2 | HL_4WJ4_002 | 4WJ4 | 0.0000 | 1 | B | tRNA | A | 31 | C | 32 | U | 33 | G | 34 | U | 35 | U | 36 | A | 38 | U | 39 | cWW | ncWW | |
| 3 | HL_4WJ3_008 | 4WJ3 | 0.2400 | 1 | S | tRNA | A | 31 | C | 32 | U | 33 | G | 34 | U | 35 | U | 36 | A | 38 | U | 39 | cWW | ncWW | |
| 4 | HL_3KFU_005 | 3KFU | 0.2741 | 1 | L | tRNA | G | 31 | C | 32 | U | 33 | G | 34 | U | 35 | U | 36 | A | 38 | C | 39 | cWW | cWW | ncWw |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACUGUUAAU | 3 |
| GCUGUUAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUGUUAA | 4 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.2 | 3.11 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-09-26 | 2018-10-19 |
| Status | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | New id, no parents | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-cWW-R-R-R
- Heat map statistics
- Min 0.24 | Avg 0.16 | Max 0.27
Coloring options: