Motif HL_52574.3 Version HL_52574.3 of this group appears in releases 1.5 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-5 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2GDI_003 | 2GDI | 0.7797 | 0 | Y | TPP riboswitch (THI element) | C | 27 | U | 28 | G | 29 | C | 30 | G | 31 | U | 32 | G | 33 | cWW | ntWW | ||
| 2 | HL_2GDI_001 | 2GDI | 0.7715 | 0 | X | TPP riboswitch (THI element) | C | 27 | U | 28 | G | 29 | C | 30 | G | 31 | U | 32 | G | 33 | cWW | tWW | ||
| 3 | HL_2AW7_014 | 2AW7 | 0.7733 | 0 | A | SSU rRNA | G | 617 | C | 618 | U | 619 | C | 620 | A | 621 | A | 622 | C | 623 | cWW | ntWH | ||
| 4 | HL_1FJG_014 | 1FJG | 0.7932 | 0 | GNRA-like with tWH (H) | A | SSU rRNA | G | 617 | C | 618 | U | 619 | C | 620 | A | 621 | A | 622 | C | 623 | cWW | ntWH | |
| 5 | HL_3AL0_002 | 3AL0 | 0.8357 | 2 | E | tRNA | A | 31 | C | 32 | C | 34 | U | 35 | G | 36 | A | 38 | U | 39 | cWW | cWW | ||
| 6 | HL_1Y26_002 | 1Y26 | 0.8443 | 1 | Purine riboswitch | X | Purine riboswitch | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH | |
| 7 | HL_3FO4_002 | 3FO4 | 0.8623 | 1 | A | Purine riboswitch | G | 46 | U | 47 | U | 49 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH | ||
| 8 | HL_3LA5_002 | 3LA5 | 0.7650 | 1 | Purine riboswitch | A | Purine riboswitch | G | 46 | C | 47 | U | 49 | C | 50 | C | 51 | A | 52 | C | 53 | cWW | ||
| 9 | HL_1FJG_002 | 1FJG | 0.6542 | 0 | A | SSU rRNA | G | 80 | U | 81 | U | 82 | U | 83 | U | 84 | A | 88 | C | 89 | cWW | ntSH | ||
| 10 | HL_4IOA_061 | 4IOA | 0.0913 | 0 | LSU A loop (H) | X | LSU rRNA | C | 2530 | U | 2531 | G | 2532 | U | 2533 | U | 2534 | C | 2535 | G | 2536 | cWW | ||
| 11 | HL_3V2F_060 | 3V2F | 0.0000 | 0 | A | LSU rRNA | C | 2551 | U | 2552 | G | 2553 | U | 2554 | U | 2555 | C | 2556 | G | 2557 | cWW | |||
| 12 | HL_2QBG_064 | 2QBG | 0.0957 | 0 | B | LSU rRNA | C | 2551 | U | 2552 | G | 2553 | U | 2554 | U | 2555 | C | 2556 | G | 2557 | cWW | |||
| 13 | HL_3U5H_064 | 3U5H | 0.1633 | 0 | 5 | LSU rRNA | U | 2920 | U | 2921 | G | 2922 | U | 2923 | U | 2924 | C | 2925 | A | 2926 | cWW | |||
| 14 | HL_4A1B_063 | 4A1B | 0.1797 | 0 | 1 | LSU rRNA | U | 2908 | U | 2909 | G | 2910 | U | 2911 | U | 2912 | C | 2913 | A | 2914 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGUUCG | 3 |
| CUGCGUG | 2 |
| GCUCAAC | 2 |
| GUUUCUAC | 2 |
| UUGUUCA | 2 |
| ACUCUGGAU | 1 |
| GCUUCCAC | 1 |
| GUUUUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGUUC | 5 |
| UGCGU | 2 |
| CUCAA | 2 |
| UUUCUA | 2 |
| CUCUGGA | 1 |
| CUUCCA | 1 |
| UUUUA | 1 |
Release history
| Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_52574.3 | Only in the parent motif |
|---|---|---|---|
| HL_52574.2 Compare | HL_2GDI_001, HL_3V2F_060, HL_2GDI_003, HL_4IOA_061, HL_1FJG_014, HL_4A1B_063, HL_2QBG_064, HL_1FJG_002, HL_3U5H_064, HL_1Y26_002, HL_3AL0_002, HL_3LA5_002, HL_3FO4_002, HL_2AW7_014 | HL_2XZM_029 |
Children motifs
| Child motif | Common motif instances | Only in HL_52574.3 | Only in the child motif |
|---|---|---|---|
| HL_52574.4 Compare | HL_2GDI_001, HL_2GDI_003, HL_4IOA_061, HL_1FJG_014, HL_4A1B_063, HL_2QBG_064, HL_1FJG_002, HL_3U5H_064, HL_1Y26_002, HL_3AL0_002, HL_3LA5_002, HL_3FO4_002, HL_2AW7_014 | HL_3V2F_060 | HL_1VW3_053, HL_4NVV_060 |
- Annotations
-
- (10)
- Purine riboswitch (2)
- GNRA-like with tWH (H) (1)
- LSU A loop (H) (1)
- Basepair signature
- cWW-tWH-R-R-R
- Heat map statistics
- Min 0.06 | Avg 0.59 | Max 0.91
Coloring options: