Motif HL_52706.1 Version HL_52706.1 of this group appears in releases 3.80 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 1-17 | 2-16 | 6-13 | 7-12 | 8-10 | 11-12 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6XKO_001 | 6XKO | 0.0000 | 0 | A | PreQ1-III riboswitch | C | 4 | A | 5 | A | 6 | C | 7 | U | 8 | U | 9 | A | 10 | G | 11 | G | 12 | A | 13 | U | 14 | U | 15 | U | 16 | U | 17 | A | 18 | G | 19 | G | 20 | cWW | cWW | ||||
| 2 | HL_8C3A_226 | 8C3A | 0.9233 | 0 | CM | SSU rRNA | U | 1673 | U | 1674 | U | 1675 | A | 1676 | G | 1677 | G | 1678 | A | 1679 | A | 1680 | A | 1694 | U | 1695 | U | 1696 | C | 1697 | U | 1698 | G | 1699 | G | 1700 | A | 1701 | A | 1702 | cWW | cWW | ncWW | ncSW | ncWW | ncSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAACUUAGGAUUUUAGG | 1 |
| UUUAGGAAAUUCUGGAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AACUUAGGAUUUUAG | 1 |
| UUAGGAAAUUCUGGA | 1 |
Release history
| Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|
| Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-cWW-F-F-F-F-F-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.92 | Avg 0.46 | Max 0.92
Coloring options: