Motif HL_52776.1 Version HL_52776.1 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8GLP_042 | 8GLP | 0.5894 | 0 | L5 | LSU rRNA | G | 2664 | U | 2665 | U | 2666 | C | 2667 | G | 2668 | C | 2669 | C | 2670 | cWW | tSH | |
| 2 | HL_8B0X_056 | 8B0X | 0.0000 | 0 | a | LSU rRNA | C | 887 | A | 888 | U | 889 | C | 890 | C | 891 | C | 892 | G | 893 | cWW | tSH | |
| 3 | HL_9DFE_024 | 9DFE | 0.4613 | 1 | 1A | LSU rRNA | C | 884 | C | 885 | C | 886 | C | 888 | C | 889 | A | 890 | G | 892 | cWW | ncSW | ntSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUCGCC | 1 |
| CAUCCCG | 1 |
| CCCACCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUCGC | 1 |
| AUCCC | 1 |
| CCACCA | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-tSH-F-F-F
- Heat map statistics
- Min 0.46 | Avg 0.37 | Max 0.60
Coloring options: