Motif HL_53753.1 Version HL_53753.1 of this group appears in releases 0.6 to 1.7
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1FJG_004 | 1FJG | 0.0000 | 2 | A | SSU rRNA | C | 190|||B | C | 190|||C | U | 190|||D | G | 190|||G | cWW | |
| 2 | HL_1H4S_002 | 1H4S | 0.1980 | 3 | tRNA anticodon loop with synthetase | T | tRNA | U | 32 | U | 33 | C | 34 | A | 38 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUUGG | 1 |
| UUCGGGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUUG | 1 |
| UCGGG | 1 |
Release history
| Release | 0.6 | 0.7 | 0.8 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_53753.1 | Only in the parent motif |
|---|---|---|---|
| HL_39922.1 Compare | HL_1H4S_002 | HL_1FJG_004 | |
| HL_27809.1 Compare | HL_1FJG_004 | HL_1H4S_002 | HL_2QBG_053 |
Children motifs
| Child motif | Common motif instances | Only in HL_53753.1 | Only in the child motif |
|---|---|---|---|
| HL_84768.1 Compare | HL_1H4S_002 | HL_1FJG_004 | |
| HL_74505.1 Compare | HL_1FJG_004 | HL_1H4S_002 | HL_2QBG_053 |
- Annotations
-
- (1)
- tRNA anticodon loop with synthetase (1)
- Basepair signature
- cWW-R
- Heat map statistics
- Min 0.20 | Avg 0.10 | Max 0.20
Coloring options: